{"id":"https://openalex.org/W3096305909","doi":"https://doi.org/10.1093/bioinformatics/btaa937","title":"CATH functional families predict functional sites in proteins","display_name":"CATH functional families predict functional sites in proteins","publication_year":2020,"publication_date":"2020-10-28","ids":{"openalex":"https://openalex.org/W3096305909","doi":"https://doi.org/10.1093/bioinformatics/btaa937","mag":"3096305909","pmid":"https://pubmed.ncbi.nlm.nih.gov/33135053"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa937","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa937","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1099/38157215/btaa937.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1099/38157215/btaa937.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051471593","display_name":"Sayoni Das","orcid":"https://orcid.org/0000-0001-6256-5646"},"institutions":[{"id":"https://openalex.org/I4210145639","display_name":"BirdLife international","ror":"https://ror.org/04wcaa208","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210145639"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sayoni Das","raw_affiliation_strings":["PrecisionLife Ltd., Long Hanborough , OX29 8LJ Oxford, UK"],"affiliations":[{"raw_affiliation_string":"PrecisionLife Ltd., Long Hanborough , OX29 8LJ Oxford, UK","institution_ids":["https://openalex.org/I4210145639"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018758368","display_name":"Harry Scholes","orcid":"https://orcid.org/0000-0003-4745-4854"},"institutions":[{"id":"https://openalex.org/I4210157240","display_name":"Institute of Structural and Molecular Biology","ror":"https://ror.org/05wsetc54","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I124357947","https://openalex.org/I4210157240","https://openalex.org/I45129253","https://openalex.org/I98259816"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Harry M Scholes","raw_affiliation_strings":["Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK","institution_ids":["https://openalex.org/I4210157240","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036599989","display_name":"Neeladri Sen","orcid":"https://orcid.org/0000-0002-3324-5755"},"institutions":[{"id":"https://openalex.org/I4210157240","display_name":"Institute of Structural and Molecular Biology","ror":"https://ror.org/05wsetc54","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I124357947","https://openalex.org/I4210157240","https://openalex.org/I45129253","https://openalex.org/I98259816"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neeladri Sen","raw_affiliation_strings":["Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK","institution_ids":["https://openalex.org/I4210157240","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081250379","display_name":"Christine Orengo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210157240","display_name":"Institute of Structural and Molecular Biology","ror":"https://ror.org/05wsetc54","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I124357947","https://openalex.org/I4210157240","https://openalex.org/I45129253","https://openalex.org/I98259816"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Christine Orengo","raw_affiliation_strings":["Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Structural and Molecular Biology, University College London , WC1E 6BT, London, UK","institution_ids":["https://openalex.org/I4210157240","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051471593","https://openalex.org/A5081250379"],"corresponding_institution_ids":["https://openalex.org/I4210145639","https://openalex.org/I4210157240","https://openalex.org/I45129253"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0338,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.93153555,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"8","first_page":"1099","last_page":"1106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6328489184379578},{"id":"https://openalex.org/keywords/functional-analysis","display_name":"Functional analysis","score":0.6140706539154053},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5501417517662048},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5226632952690125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4202865958213806},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4138113856315613},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38203495740890503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34763962030410767},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19644054770469666},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1012534499168396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6328489184379578},{"id":"https://openalex.org/C55112680","wikidata":"https://www.wikidata.org/wiki/Q190549","display_name":"Functional analysis","level":3,"score":0.6140706539154053},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5501417517662048},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5226632952690125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4202865958213806},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4138113856315613},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38203495740890503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34763962030410767},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19644054770469666},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1012534499168396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa937","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa937","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1099/38157215/btaa937.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33135053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33135053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10114671","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10114671/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Bioinformatics       (2020)     (In press).  ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8150129","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8150129","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa937","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa937","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1099/38157215/btaa937.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1743325579","display_name":null,"funder_award_id":"203780/Z/16/A","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G2694030226","display_name":null,"funder_award_id":"BB/S016007/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2973693531","display_name":null,"funder_award_id":"BB/P017193/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3359526469","display_name":null,"funder_award_id":"BB/L005042/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5767990935","display_name":"3D-Gateway - Gateway to protein structure and function","funder_award_id":"BB/S020144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6233103190","display_name":null,"funder_award_id":"BB/P023940/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7674564319","display_name":null,"funder_award_id":"BB/S020144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8466563894","display_name":null,"funder_award_id":"BB/P026001/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8549584056","display_name":null,"funder_award_id":"BB/R014892/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3096305909.pdf","grobid_xml":"https://content.openalex.org/works/W3096305909.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W34482235","https://openalex.org/W761483293","https://openalex.org/W1678356000","https://openalex.org/W1909990781","https://openalex.org/W1965582988","https://openalex.org/W1982309045","https://openalex.org/W1997566863","https://openalex.org/W2018661561","https://openalex.org/W2043699100","https://openalex.org/W2043886357","https://openalex.org/W2043904638","https://openalex.org/W2046407284","https://openalex.org/W2054467356","https://openalex.org/W2059446387","https://openalex.org/W2064430199","https://openalex.org/W2065921821","https://openalex.org/W2067865468","https://openalex.org/W2070818602","https://openalex.org/W2087980904","https://openalex.org/W2090649877","https://openalex.org/W2091125057","https://openalex.org/W2092226746","https://openalex.org/W2094148990","https://openalex.org/W2100383158","https://openalex.org/W2101234009","https://openalex.org/W2101291993","https://openalex.org/W2102524821","https://openalex.org/W2104338263","https://openalex.org/W2104601544","https://openalex.org/W2104760790","https://openalex.org/W2113944588","https://openalex.org/W2117164735","https://openalex.org/W2117486996","https://openalex.org/W2132395520","https://openalex.org/W2136832587","https://openalex.org/W2137597742","https://openalex.org/W2137991504","https://openalex.org/W2144494426","https://openalex.org/W2151311229","https://openalex.org/W2153613893","https://openalex.org/W2155469822","https://openalex.org/W2157255054","https://openalex.org/W2158714788","https://openalex.org/W2160378127","https://openalex.org/W2162259397","https://openalex.org/W2163879391","https://openalex.org/W2168621448","https://openalex.org/W2181503019","https://openalex.org/W2204659374","https://openalex.org/W2227395312","https://openalex.org/W2376573086","https://openalex.org/W2472548405","https://openalex.org/W2523926726","https://openalex.org/W2612690371","https://openalex.org/W2765284721","https://openalex.org/W2777899362","https://openalex.org/W2793397305","https://openalex.org/W2795640351","https://openalex.org/W2896134881","https://openalex.org/W2899664253","https://openalex.org/W2949354383","https://openalex.org/W2966866763","https://openalex.org/W2989608901","https://openalex.org/W3145289798","https://openalex.org/W3164046276","https://openalex.org/W4239849280","https://openalex.org/W6675354045","https://openalex.org/W6675440912"],"related_works":["https://openalex.org/W4232901336","https://openalex.org/W2026230782","https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W3113097591","https://openalex.org/W1564151294","https://openalex.org/W1985072011","https://openalex.org/W2961085424"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
