{"id":"https://openalex.org/W3096716224","doi":"https://doi.org/10.1093/bioinformatics/btaa929","title":"keras_dna: a wrapper for fast implementation of deep learning models in genomics","display_name":"keras_dna: a wrapper for fast implementation of deep learning models in genomics","publication_year":2020,"publication_date":"2020-10-19","ids":{"openalex":"https://openalex.org/W3096716224","doi":"https://doi.org/10.1093/bioinformatics/btaa929","mag":"3096716224","pmid":"https://pubmed.ncbi.nlm.nih.gov/33135730"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa929","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa929","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013444011","display_name":"Etienne Routhier","orcid":null},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210140797","display_name":"Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e","ror":"https://ror.org/04zaaa143","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210098836","https://openalex.org/I4210140797"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Etienne Routhier","raw_affiliation_strings":["Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France","institution_ids":["https://openalex.org/I4210140797","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007901436","display_name":"Ayman Bin Kamruddin","orcid":"https://orcid.org/0000-0002-2643-8399"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210140797","display_name":"Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e","ror":"https://ror.org/04zaaa143","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210098836","https://openalex.org/I4210140797"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ayman Bin Kamruddin","raw_affiliation_strings":["Mus\u00e9um National d\u2019Histoire Naturelle, Structure et Instabilit\u00e9 des G\u00e9nomes, UMR7196 , Paris 75231, France","Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France"],"affiliations":[{"raw_affiliation_string":"Mus\u00e9um National d\u2019Histoire Naturelle, Structure et Instabilit\u00e9 des G\u00e9nomes, UMR7196 , Paris 75231, France","institution_ids":["https://openalex.org/I4210166728"]},{"raw_affiliation_string":"Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France","institution_ids":["https://openalex.org/I4210140797","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011027517","display_name":"Julien Mozziconacci","orcid":"https://orcid.org/0000-0001-5652-0302"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210140797","display_name":"Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e","ror":"https://ror.org/04zaaa143","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210098836","https://openalex.org/I4210140797"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Julien Mozziconacci","raw_affiliation_strings":["Mus\u00e9um National d\u2019Histoire Naturelle, Structure et Instabilit\u00e9 des G\u00e9nomes, UMR7196 , Paris 75231, France","Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France"],"affiliations":[{"raw_affiliation_string":"Mus\u00e9um National d\u2019Histoire Naturelle, Structure et Instabilit\u00e9 des G\u00e9nomes, UMR7196 , Paris 75231, France","institution_ids":["https://openalex.org/I4210166728"]},{"raw_affiliation_string":"Sorbonne Universite, CNRS, Laboratoire de Physique Th\u00e9orique de la Mati\u00e8re Condens\u00e9e (LPTMC) , Paris F-75252, France","institution_ids":["https://openalex.org/I4210140797","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011027517","https://openalex.org/A5013444011"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210140797","https://openalex.org/I4210166728"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4143,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.60434248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"37","issue":"11","first_page":"1593","last_page":"1594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6505862474441528},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6133193373680115},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5588605403900146},{"id":"https://openalex.org/keywords/cloning","display_name":"Cloning (programming)","score":0.4952754080295563},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4773597717285156},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4576406180858612},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42217496037483215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3974986672401428},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32228225469589233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2599729597568512},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.19932523369789124},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16540014743804932},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1339038908481598},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12515470385551453},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11573925614356995}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6505862474441528},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6133193373680115},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5588605403900146},{"id":"https://openalex.org/C121050878","wikidata":"https://www.wikidata.org/wiki/Q5135020","display_name":"Cloning (programming)","level":2,"score":0.4952754080295563},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4773597717285156},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4576406180858612},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42217496037483215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3974986672401428},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32228225469589233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2599729597568512},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.19932523369789124},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16540014743804932},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1339038908481598},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12515470385551453},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11573925614356995}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa929","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa929","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33135730","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33135730","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322893","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1505191356","https://openalex.org/W2198606573","https://openalex.org/W2769569970","https://openalex.org/W2901218091","https://openalex.org/W2947187332","https://openalex.org/W3035492333"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W4384009753","https://openalex.org/W2791776396","https://openalex.org/W4286531993","https://openalex.org/W2964820744","https://openalex.org/W4247858078"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
