{"id":"https://openalex.org/W3093800398","doi":"https://doi.org/10.1093/bioinformatics/btaa900","title":"NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data","display_name":"NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data","publication_year":2020,"publication_date":"2020-10-05","ids":{"openalex":"https://openalex.org/W3093800398","doi":"https://doi.org/10.1093/bioinformatics/btaa900","mag":"3093800398","pmid":"https://pubmed.ncbi.nlm.nih.gov/33079990"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa900","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa900","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074491689","display_name":"Hector Rodr\u00edguez\u2010P\u00e9rez","orcid":"https://orcid.org/0000-0003-1777-9084"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I4210088232","display_name":"Hospital Universitario Nuestra Se\u00f1ora de Candelaria","ror":"https://ror.org/005a3p084","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210088232"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H\u00e9ctor Rodr\u00edguez-P\u00e9rez","raw_affiliation_strings":["Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain"],"affiliations":[{"raw_affiliation_string":"Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain","institution_ids":["https://openalex.org/I4210088232","https://openalex.org/I158438070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023693601","display_name":"Laura Ciuffreda","orcid":"https://orcid.org/0000-0003-0034-8181"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I4210088232","display_name":"Hospital Universitario Nuestra Se\u00f1ora de Candelaria","ror":"https://ror.org/005a3p084","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210088232"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laura Ciuffreda","raw_affiliation_strings":["Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain"],"affiliations":[{"raw_affiliation_string":"Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain","institution_ids":["https://openalex.org/I4210088232","https://openalex.org/I158438070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056138948","display_name":"Carlos Flores","orcid":"https://orcid.org/0000-0001-5352-069X"},"institutions":[{"id":"https://openalex.org/I158438070","display_name":"Universidad de La Laguna","ror":"https://ror.org/01r9z8p25","country_code":"ES","type":"education","lineage":["https://openalex.org/I158438070"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210088232","display_name":"Hospital Universitario Nuestra Se\u00f1ora de Candelaria","ror":"https://ror.org/005a3p084","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210088232"]},{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101737","display_name":"Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","ror":"https://ror.org/015g99884","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101737"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Carlos Flores","raw_affiliation_strings":["Genomics Division, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), 38600 Granadilla , Santa Cruz de Tenerife, Spain","Instituto de Salud Carlos III, CIBER de Enfermedades Respiratorias , Madrid, 28029, Spain","Instituto de Tecnolog\u00edas Biom\u00e9dicas (ITB), Universidad de La Laguna, 38200 San Crist\u00f3bal de La Laguna , Santa Cruz de Tenerife, Spain","Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain"],"affiliations":[{"raw_affiliation_string":"Genomics Division, Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables (ITER), 38600 Granadilla , Santa Cruz de Tenerife, Spain","institution_ids":["https://openalex.org/I4210101737"]},{"raw_affiliation_string":"Instituto de Salud Carlos III, CIBER de Enfermedades Respiratorias , Madrid, 28029, Spain","institution_ids":["https://openalex.org/I4210099160","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Instituto de Tecnolog\u00edas Biom\u00e9dicas (ITB), Universidad de La Laguna, 38200 San Crist\u00f3bal de La Laguna , Santa Cruz de Tenerife, Spain","institution_ids":["https://openalex.org/I158438070"]},{"raw_affiliation_string":"Research Unit, Hospital Universitario Nuestra Se\u00f1ora de Candelaria, Universidad de La Laguna , Santa Cruz de Tenerife, 38010, Spain","institution_ids":["https://openalex.org/I4210088232","https://openalex.org/I158438070"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056138948"],"corresponding_institution_ids":["https://openalex.org/I158438070","https://openalex.org/I2801357902","https://openalex.org/I4210088232","https://openalex.org/I4210099160","https://openalex.org/I4210101737"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.1024,"has_fulltext":false,"cited_by_count":139,"citation_normalized_percentile":{"value":0.97508317,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"11","first_page":"1600","last_page":"1601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11551","display_name":"Infective Endocarditis Diagnosis and Management","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7174223065376282},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6401487588882446},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.6145040392875671},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5832726955413818},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5620739459991455},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5352613925933838},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5248489379882812},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5093287229537964},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.48774176836013794},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4844682216644287},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48304086923599243},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4794434607028961},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.47705212235450745},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4403623342514038},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4137061536312103},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18255996704101562},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.1765758991241455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16213682293891907},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.152153879404068},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.13747259974479675}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7174223065376282},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6401487588882446},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.6145040392875671},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5832726955413818},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5620739459991455},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5352613925933838},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5248489379882812},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5093287229537964},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.48774176836013794},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4844682216644287},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48304086923599243},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4794434607028961},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.47705212235450745},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4403623342514038},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4137061536312103},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18255996704101562},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.1765758991241455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16213682293891907},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.152153879404068},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.13747259974479675},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa900","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa900","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33079990","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33079990","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2852205192","display_name":null,"funder_award_id":"PI17/00610","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3320810704","display_name":null,"funder_award_id":"FI18/00230","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G7348496836","display_name":null,"funder_award_id":"PIFUN48/18","funder_id":"https://openalex.org/F6957601565","funder_display_name":"Fundaci\u00f3n Canaria Instituto de Investigaci\u00f3n Sanitaria de Canarias"},{"id":"https://openalex.org/G8950657758","display_name":null,"funder_award_id":"PI14/00844","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320317416","display_name":"Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","ror":"https://ror.org/015g99884"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F6957601565","display_name":"Fundaci\u00f3n Canaria Instituto de Investigaci\u00f3n Sanitaria de Canarias","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2072970694","https://openalex.org/W2345658906","https://openalex.org/W2601243251","https://openalex.org/W2889326414","https://openalex.org/W2951160681","https://openalex.org/W2990618091","https://openalex.org/W3003882680","https://openalex.org/W3006653136","https://openalex.org/W3007490551"],"related_works":["https://openalex.org/W4281567513","https://openalex.org/W2945250978","https://openalex.org/W2970289413","https://openalex.org/W3032384960","https://openalex.org/W3120817351","https://openalex.org/W3042369822","https://openalex.org/W3209266349","https://openalex.org/W2514454343","https://openalex.org/W3096946169","https://openalex.org/W2113128227"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":37},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}