{"id":"https://openalex.org/W3093513099","doi":"https://doi.org/10.1093/bioinformatics/btaa892","title":"HD-eXplosion: visualization of hydrogen\u2013deuterium exchange data as chiclet and volcano plots with statistical filtering","display_name":"HD-eXplosion: visualization of hydrogen\u2013deuterium exchange data as chiclet and volcano plots with statistical filtering","publication_year":2020,"publication_date":"2020-10-06","ids":{"openalex":"https://openalex.org/W3093513099","doi":"https://doi.org/10.1093/bioinformatics/btaa892","mag":"3093513099","pmid":"https://pubmed.ncbi.nlm.nih.gov/33079991"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa892","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa892","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1926/40501722/btaa892.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1926/40501722/btaa892.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091097798","display_name":"Naifu Zhang","orcid":"https://orcid.org/0000-0003-2586-3841"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naifu Zhang","raw_affiliation_strings":["Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031834371","display_name":"Xiaohe Yu","orcid":"https://orcid.org/0000-0001-9605-1141"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaohe Yu","raw_affiliation_strings":["Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101835849","display_name":"Xinchao Zhang","orcid":"https://orcid.org/0000-0002-9402-0867"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinchao Zhang","raw_affiliation_strings":["Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024626437","display_name":"Sheena D\u2019Arcy","orcid":"https://orcid.org/0000-0001-5055-988X"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sheena D\u2019Arcy","raw_affiliation_strings":["Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, The University of Texas at Dallas, Richardson, TX 75080, USA","institution_ids":["https://openalex.org/I162577319"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024626437"],"corresponding_institution_ids":["https://openalex.org/I162577319"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2581,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.88333945,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"37","issue":"13","first_page":"1926","last_page":"1927"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6318456530570984},{"id":"https://openalex.org/keywords/volcano","display_name":"Volcano","score":0.5977963805198669},{"id":"https://openalex.org/keywords/deuterium","display_name":"Deuterium","score":0.4672645926475525},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.429451584815979},{"id":"https://openalex.org/keywords/hydrogen","display_name":"Hydrogen","score":0.42730429768562317},{"id":"https://openalex.org/keywords/environmental-science","display_name":"Environmental science","score":0.3824732005596161},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.3438500165939331},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3053863048553467},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.29401838779449463},{"id":"https://openalex.org/keywords/seismology","display_name":"Seismology","score":0.28040987253189087},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.193134605884552},{"id":"https://openalex.org/keywords/nuclear-physics","display_name":"Nuclear physics","score":0.18519023060798645}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6318456530570984},{"id":"https://openalex.org/C120806208","wikidata":"https://www.wikidata.org/wiki/Q8072","display_name":"Volcano","level":2,"score":0.5977963805198669},{"id":"https://openalex.org/C58364064","wikidata":"https://www.wikidata.org/wiki/Q102296","display_name":"Deuterium","level":2,"score":0.4672645926475525},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.429451584815979},{"id":"https://openalex.org/C512968161","wikidata":"https://www.wikidata.org/wiki/Q556","display_name":"Hydrogen","level":2,"score":0.42730429768562317},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.3824732005596161},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.3438500165939331},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3053863048553467},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29401838779449463},{"id":"https://openalex.org/C165205528","wikidata":"https://www.wikidata.org/wiki/Q83371","display_name":"Seismology","level":1,"score":0.28040987253189087},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.193134605884552},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.18519023060798645},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003903","descriptor_name":"Deuterium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003903","descriptor_name":"Deuterium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003903","descriptor_name":"Deuterium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005107","descriptor_name":"Explosions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005107","descriptor_name":"Explosions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005107","descriptor_name":"Explosions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041961","descriptor_name":"Deuterium Exchange Measurement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041961","descriptor_name":"Deuterium Exchange Measurement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041961","descriptor_name":"Deuterium Exchange Measurement","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa892","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa892","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1926/40501722/btaa892.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33079991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33079991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:7381460","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8487629","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8487629","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8487629","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa892","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa892","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/13/1926/40501722/btaa892.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8105491359","display_name":null,"funder_award_id":"GM133751","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093513099.pdf","grobid_xml":"https://content.openalex.org/works/W3093513099.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2023115763","https://openalex.org/W2066736637","https://openalex.org/W2131292506","https://openalex.org/W2147024375","https://openalex.org/W2321933331","https://openalex.org/W2474169383","https://openalex.org/W2531370029","https://openalex.org/W2734517989","https://openalex.org/W2743877237","https://openalex.org/W2755848776","https://openalex.org/W2944937226","https://openalex.org/W2951230445","https://openalex.org/W2955168413","https://openalex.org/W2990803388"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2083693806","https://openalex.org/W4394816020","https://openalex.org/W2062064101","https://openalex.org/W209750280","https://openalex.org/W25222758","https://openalex.org/W3124914020","https://openalex.org/W2354926593","https://openalex.org/W2114372970","https://openalex.org/W2012005378"],"abstract_inverted_index":{"The":[0,7],"HD-eXplosion":[1],"application":[2],"is":[3],"available":[4],"at":[5,13],"http://hd-explosion.utdallas.edu.":[6],"source":[8],"code":[9],"can":[10],"be":[11],"found":[12],"https://github.com/HD-Explosion.":[14]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}