{"id":"https://openalex.org/W3093222095","doi":"https://doi.org/10.1093/bioinformatics/btaa887","title":"Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning","display_name":"Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning","publication_year":2020,"publication_date":"2020-09-30","ids":{"openalex":"https://openalex.org/W3093222095","doi":"https://doi.org/10.1093/bioinformatics/btaa887","mag":"3093222095","pmid":"https://pubmed.ncbi.nlm.nih.gov/33063094"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa887","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa887","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/6/750/37809653/btaa887.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/6/750/37809653/btaa887.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079936890","display_name":"Runbin Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Runbin Tang","raw_affiliation_strings":["Advanced Analytics Institute, University of Technology Sydney , Sydney, NSW 2007, Australia","Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, University of Technology Sydney , Sydney, NSW 2007, Australia","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026047510","display_name":"Zu\u2010Guo Yu","orcid":"https://orcid.org/0000-0001-5913-9646"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["AU","CN"],"is_corresponding":true,"raw_author_name":"Zuguo Yu","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China","School of Electrical Engineering and Computer Science, Queensland University of Technology , Brisbane, QLD 4001, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology , Brisbane, QLD 4001, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101683301","display_name":"Yuanlin Ma","orcid":"https://orcid.org/0000-0002-7811-7298"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanlin Ma","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001768919","display_name":"Yao\u2010Qun Wu","orcid":"https://orcid.org/0000-0002-3467-7314"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaoqun Wu","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University , Hunan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100728316","display_name":"Yi\u2010Ping Phoebe Chen","orcid":"https://orcid.org/0000-0002-4122-3767"},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yi-Ping Phoebe Chen","raw_affiliation_strings":["Department of Computer Science and Information Technology, La Trobe University , Melbourne, VIC 3086, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Technology, La Trobe University , Melbourne, VIC 3086, Australia","institution_ids":["https://openalex.org/I196829312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 117417, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 117417, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017861049","display_name":"Jinyan Li","orcid":"https://orcid.org/0000-0003-1833-7413"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jinyan Li","raw_affiliation_strings":["Advanced Analytics Institute, University of Technology Sydney , Sydney, NSW 2007, Australia"],"raw_orcid":"https://orcid.org/0000-0003-1833-7413","affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, University of Technology Sydney , Sydney, NSW 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017861049","https://openalex.org/A5026047510"],"corresponding_institution_ids":["https://openalex.org/I114017466","https://openalex.org/I160993911","https://openalex.org/I4610292"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2639,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.552589,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"37","issue":"6","first_page":"750","last_page":"758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.26339998841285706,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.26339998841285706,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.18799999356269836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.04259999841451645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crfs","display_name":"CRFS","score":0.9534238576889038},{"id":"https://openalex.org/keywords/crossover","display_name":"Crossover","score":0.7032014727592468},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6184543967247009},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5083009600639343},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47699859738349915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4651307463645935},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.46197429299354553},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4529125690460205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3810960650444031},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3622918725013733},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.26589298248291016},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.11542293429374695},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1065942645072937}],"concepts":[{"id":"https://openalex.org/C2775953691","wikidata":"https://www.wikidata.org/wiki/Q5013874","display_name":"CRFS","level":3,"score":0.9534238576889038},{"id":"https://openalex.org/C122507166","wikidata":"https://www.wikidata.org/wiki/Q628906","display_name":"Crossover","level":2,"score":0.7032014727592468},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6184543967247009},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5083009600639343},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47699859738349915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4651307463645935},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.46197429299354553},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4529125690460205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3810960650444031},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3622918725013733},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.26589298248291016},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.11542293429374695},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1065942645072937},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa887","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa887","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/6/750/37809653/btaa887.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33063094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33063094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/148372","is_oa":true,"landing_page_url":"http://hdl.handle.net/10453/148372","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa887","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa887","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/6/750/37809653/btaa887.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8486255770","display_name":"\u5206\u5f62\u65f6\u95f4\u5e8f\u5217\u548c\u590d\u6742\u7f51\u7edc\u7684\u91cd\u5206\u5f62\u5206\u6790\u53ca\u5176\u5728\u51e0\u4e2a\u751f\u7269\u4fe1\u606f\u95ee\u9898\u4e2d\u7684\u5e94\u7528\u7814\u7a76","funder_award_id":"11871061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8732994852","display_name":null,"funder_award_id":"61828203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093222095.pdf","grobid_xml":"https://content.openalex.org/works/W3093222095.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W390117428","https://openalex.org/W984974935","https://openalex.org/W1967236378","https://openalex.org/W1970335365","https://openalex.org/W1988720992","https://openalex.org/W1989004319","https://openalex.org/W2052684427","https://openalex.org/W2052857100","https://openalex.org/W2067925490","https://openalex.org/W2070519435","https://openalex.org/W2073004681","https://openalex.org/W2109113807","https://openalex.org/W2110071511","https://openalex.org/W2116049022","https://openalex.org/W2128260028","https://openalex.org/W2136431383","https://openalex.org/W2144413761","https://openalex.org/W2156125289","https://openalex.org/W2158666214","https://openalex.org/W2166162901","https://openalex.org/W2167272772","https://openalex.org/W2257413528","https://openalex.org/W2288331077","https://openalex.org/W2311203695","https://openalex.org/W2333317569","https://openalex.org/W2344221688","https://openalex.org/W2586665457","https://openalex.org/W2598176148","https://openalex.org/W2605595174","https://openalex.org/W2735497859","https://openalex.org/W2761518648","https://openalex.org/W2803770947","https://openalex.org/W2803977340","https://openalex.org/W2937697845","https://openalex.org/W2950237782","https://openalex.org/W2951725148","https://openalex.org/W3006074294","https://openalex.org/W3008164819"],"related_works":["https://openalex.org/W2055466819","https://openalex.org/W3022161193","https://openalex.org/W4295602020","https://openalex.org/W2800507189","https://openalex.org/W2361832341","https://openalex.org/W2132346352","https://openalex.org/W165283731","https://openalex.org/W2104929832","https://openalex.org/W2772211479","https://openalex.org/W2158188757"],"abstract_inverted_index":{"MOTIVATION:":[0],"Infection":[1],"with":[2],"strains":[3],"of":[4,16,28,52,57,91,106,109,118,129,145,155,193,197,199,217],"different":[5],"subtypes":[6,157],"and":[7,81,142,158,173],"the":[8,13,25,29,54,88,92,103,116,146,181,191,194,214],"subsequent":[9],"crossover":[10],"reading":[11],"between":[12],"two":[14],"strands":[15],"genomic":[17,36],"RNAs":[18],"by":[19,126],"host":[20],"cells'":[21],"reverse":[22],"transcriptase":[23],"are":[24,148,207,228],"main":[26],"causes":[27],"vast":[30],"HIV-1":[31,166,200],"sequence":[32,112],"diversity.":[33],"Such":[34],"inter-subtype":[35],"recombinants":[37],"can":[38,183],"become":[39],"circulating":[40],"recombinant":[41,201],"forms":[42],"(CRFs)":[43],"after":[44],"widespread":[45],"transmissions":[46],"in":[47,190],"a":[48,58,62,74,98,110,127],"population.":[49],"Complete":[50],"prediction":[51,105,117,123,192],"all":[53],"subtype":[55,80,171],"sources":[56,108],"CRF":[59,111,175],"strain":[60,75],"is":[61,68,76,124],"complicated":[63],"machine":[64],"learning":[65,100,132],"problem.":[66],"It":[67],"also":[69],"difficult":[70],"to":[71,85,134,151,164,213],"understand":[72],"whether":[73],"an":[77],"emerging":[78],"new":[79,89],"if":[82],"so,":[83],"how":[84],"accurately":[86],"identify":[87],"components":[90],"genetic":[93],"source.":[94],"RESULTS:":[95],"We":[96],"introduce":[97],"multi-label":[99,131],"algorithm":[101],"for":[102],"complete":[104,195,215],"multiple":[107],"as":[113,115],"well":[114],"its":[119],"chronological":[120],"number.":[121],"The":[122,160],"strengthened":[125],"voting":[128],"various":[130],"methods":[133],"avoid":[135],"biased":[136],"decisions.":[137],"In":[138],"our":[139],"steps,":[140],"frequency":[141],"position":[143],"features":[144],"sequences":[147,172],"both":[149],"extracted":[150],"capture":[152],"signature":[153],"patterns":[154],"pure":[156,170],"CRFs.":[159],"method":[161,182],"was":[162],"applied":[163],"7185":[165],"sequences,":[167],"comprising":[168],"5530":[169],"1655":[174],"sequences.":[176],"Results":[177],"have":[178],"demonstrated":[179],"that":[180],"achieve":[184],"very":[185,211],"high":[186],"accuracy":[187],"(reaching":[188],"99%)":[189],"set":[196,216],"labels":[198],"forms.":[202],"A":[203],"few":[204],"wrong":[205],"predictions":[206],"actually":[208],"incomplete":[209],"predictions,":[210],"close":[212],"genuine":[218],"labels.":[219],"AVAILABILITY":[220],"AND":[221],"IMPLEMENTATION:":[222],"https://github.com/Runbin-tang/The-source-of-HIV-CRFs-prediction.":[223],"SUPPLEMENTARY":[224],"INFORMATION:":[225],"Supplementary":[226],"data":[227],"available":[229],"at":[230],"Bioinformatics":[231],"online.":[232]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}