{"id":"https://openalex.org/W3092795937","doi":"https://doi.org/10.1093/bioinformatics/btaa885","title":"Accurate and efficient gene function prediction using a multi-bacterial network","display_name":"Accurate and efficient gene function prediction using a multi-bacterial network","publication_year":2020,"publication_date":"2020-09-30","ids":{"openalex":"https://openalex.org/W3092795937","doi":"https://doi.org/10.1093/bioinformatics/btaa885","mag":"3092795937","pmid":"https://pubmed.ncbi.nlm.nih.gov/33063084"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa885","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa885","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017369999","display_name":"Jeffrey Law","orcid":"https://orcid.org/0000-0003-2828-1273"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jeffrey N Law","raw_affiliation_strings":["Genetics, Bioinformatics and Computational Biology Ph.D. Program , Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Genetics, Bioinformatics and Computational Biology Ph.D. Program , Blacksburg, VA 24061, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088787312","display_name":"Shiv D. Kale","orcid":"https://orcid.org/0000-0002-0645-1799"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shiv D Kale","raw_affiliation_strings":["Fralin Life Sciences Institute , Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Fralin Life Sciences Institute , Blacksburg, VA 24061, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073142937","display_name":"T. M. Murali","orcid":"https://orcid.org/0000-0003-3688-4672"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T M Murali","raw_affiliation_strings":["Department of Computer Science, Virginia Tech , Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech , Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5073142937"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09665276,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"6","first_page":"800","last_page":"806"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7655436992645264},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7431918382644653},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7080986499786377},{"id":"https://openalex.org/keywords/bounding-overwatch","display_name":"Bounding overwatch","score":0.6758506894111633},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5587921142578125},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.544026255607605},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5316586494445801},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5252484679222107},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34453821182250977},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29282552003860474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27978259325027466},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17144381999969482},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11650779843330383},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0807095468044281}],"concepts":[{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7655436992645264},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7431918382644653},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7080986499786377},{"id":"https://openalex.org/C63584917","wikidata":"https://www.wikidata.org/wiki/Q333286","display_name":"Bounding overwatch","level":2,"score":0.6758506894111633},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5587921142578125},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.544026255607605},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5316586494445801},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5252484679222107},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34453821182250977},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29282552003860474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27978259325027466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17144381999969482},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11650779843330383},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0807095468044281},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa885","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa885","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33063084","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33063084","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1159307648","display_name":null,"funder_award_id":"CCF-1617678","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1281375156","display_name":null,"funder_award_id":"W911NF-17-2-0105","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7103526010","display_name":null,"funder_award_id":"DBI-1759858","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8356053778","display_name":null,"funder_award_id":"MCB-1817736","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320312530","display_name":"Office of the Director of National Intelligence","ror":"https://ror.org/01v3fsc55"},{"id":"https://openalex.org/F4320333051","display_name":"Intelligence Advanced Research Projects Activity","ror":"https://ror.org/01v3fsc55"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1520083411","https://openalex.org/W1784780955","https://openalex.org/W1854214752","https://openalex.org/W2098432760","https://openalex.org/W2117235735","https://openalex.org/W2124649441","https://openalex.org/W2125282516","https://openalex.org/W2139823104","https://openalex.org/W2143420371","https://openalex.org/W2171815113","https://openalex.org/W2227395312","https://openalex.org/W2547533409","https://openalex.org/W2556519015","https://openalex.org/W2557496587","https://openalex.org/W2900569176","https://openalex.org/W2950595506","https://openalex.org/W2951422523","https://openalex.org/W2963146150","https://openalex.org/W2976699283","https://openalex.org/W3136918052","https://openalex.org/W4230455772","https://openalex.org/W6639055396","https://openalex.org/W6680434193","https://openalex.org/W6768809224"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2366107444","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W4388145910","https://openalex.org/W3039174484","https://openalex.org/W4287728368"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}