{"id":"https://openalex.org/W3091823365","doi":"https://doi.org/10.1093/bioinformatics/btaa877","title":"MOSAIC: a joint modeling methodology for combined circadian and non-circadian analysis of multi-omics data","display_name":"MOSAIC: a joint modeling methodology for combined circadian and non-circadian analysis of multi-omics data","publication_year":2020,"publication_date":"2020-09-28","ids":{"openalex":"https://openalex.org/W3091823365","doi":"https://doi.org/10.1093/bioinformatics/btaa877","mag":"3091823365","pmid":"https://pubmed.ncbi.nlm.nih.gov/33051654"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa877","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa877","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/biblio/1730980","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091591204","display_name":"Hannah De los Santos","orcid":"https://orcid.org/0000-0003-2543-3286"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hannah De los Santos","raw_affiliation_strings":["Department of Computer Science, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","Institute for Data Exploration and Applications, Rensselaer Polytechnic Institute , Troy, NY 12180, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Institute for Data Exploration and Applications, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048876983","display_name":"Kristin P. Bennett","orcid":"https://orcid.org/0000-0002-8782-105X"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristin P Bennett","raw_affiliation_strings":["Department of Computer Science, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","Department of Mathematical Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","Institute for Data Exploration and Applications, Rensselaer Polytechnic Institute , Troy, NY 12180, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Department of Mathematical Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Institute for Data Exploration and Applications, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016869041","display_name":"Jennifer Hurley","orcid":"https://orcid.org/0000-0002-1085-9391"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jennifer M Hurley","raw_affiliation_strings":["Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","Department of Biological Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Department of Biological Sciences, Rensselaer Polytechnic Institute , Troy, NY 12180, USA","institution_ids":["https://openalex.org/I165799507"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016869041"],"corresponding_institution_ids":["https://openalex.org/I165799507"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0781,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.73736264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"37","issue":"6","first_page":"767","last_page":"774"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9706000089645386,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circadian-rhythm","display_name":"Circadian rhythm","score":0.8706308007240295},{"id":"https://openalex.org/keywords/circadian-clock","display_name":"Circadian clock","score":0.6298295259475708},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.6295177340507507},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6273496747016907},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.624184787273407},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4690711200237274},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4274013936519623},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.4173380434513092},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.313690721988678},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1397903859615326},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.10848703980445862},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.082773357629776}],"concepts":[{"id":"https://openalex.org/C121446783","wikidata":"https://www.wikidata.org/wiki/Q208353","display_name":"Circadian rhythm","level":2,"score":0.8706308007240295},{"id":"https://openalex.org/C38606739","wikidata":"https://www.wikidata.org/wiki/Q5121352","display_name":"Circadian clock","level":3,"score":0.6298295259475708},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.6295177340507507},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6273496747016907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.624184787273407},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4690711200237274},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4274013936519623},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.4173380434513092},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.313690721988678},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1397903859615326},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.10848703980445862},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.082773357629776},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009492","descriptor_name":"Neurospora crassa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa877","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa877","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33051654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33051654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1730980","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1730980","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1781933","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1781933","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8098022","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8098022","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:osti.gov:1730980","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1730980","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G423292275","display_name":null,"funder_award_id":"#1331023","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5035310439","display_name":null,"funder_award_id":"NIGMS R35 GM128687","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6340158772","display_name":null,"funder_award_id":"NIBIB U01 EB022546","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6475451731","display_name":null,"funder_award_id":"PNNL 47818","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309500","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W31275902","https://openalex.org/W1971883897","https://openalex.org/W1979385177","https://openalex.org/W1985332662","https://openalex.org/W1992726958","https://openalex.org/W2007091097","https://openalex.org/W2022442940","https://openalex.org/W2035476735","https://openalex.org/W2045416867","https://openalex.org/W2047331522","https://openalex.org/W2051145352","https://openalex.org/W2056370266","https://openalex.org/W2056395995","https://openalex.org/W2098064548","https://openalex.org/W2102007306","https://openalex.org/W2116107838","https://openalex.org/W2128551987","https://openalex.org/W2142635246","https://openalex.org/W2164498509","https://openalex.org/W2167325131","https://openalex.org/W2168175751","https://openalex.org/W2342548755","https://openalex.org/W2436099095","https://openalex.org/W2463616135","https://openalex.org/W2506677186","https://openalex.org/W2548982769","https://openalex.org/W2765681392","https://openalex.org/W2787429377","https://openalex.org/W2790759916","https://openalex.org/W2884682196","https://openalex.org/W2903691731","https://openalex.org/W2950463698","https://openalex.org/W2966658121","https://openalex.org/W2972791547","https://openalex.org/W2990770944","https://openalex.org/W3003192283","https://openalex.org/W3014047879","https://openalex.org/W3119784685","https://openalex.org/W6748862808"],"related_works":["https://openalex.org/W1982829397","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W1999412725","https://openalex.org/W4390205769","https://openalex.org/W2124137418","https://openalex.org/W2140682486","https://openalex.org/W2391458050","https://openalex.org/W3022402204","https://openalex.org/W2086860678"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
