{"id":"https://openalex.org/W3092571898","doi":"https://doi.org/10.1093/bioinformatics/btaa862","title":"PredHPI: an integrated web server platform for the detection and visualization of host\u2013pathogen interactions using sequence-based methods","display_name":"PredHPI: an integrated web server platform for the detection and visualization of host\u2013pathogen interactions using sequence-based methods","publication_year":2020,"publication_date":"2020-09-22","ids":{"openalex":"https://openalex.org/W3092571898","doi":"https://doi.org/10.1093/bioinformatics/btaa862","mag":"3092571898"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa862","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa862","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051140415","display_name":"Cristian D Loaiza","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cristian D Loaiza","raw_affiliation_strings":["Bioinformatics Facility, Center for Integrated BioSystems (CIB) , Logan, UT 84322, USA","Bioinformatics Lab, Department of Plants, Soils and Climate , Logan, UT 84322, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Facility, Center for Integrated BioSystems (CIB) , Logan, UT 84322, USA","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics Lab, Department of Plants, Soils and Climate , Logan, UT 84322, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067874418","display_name":"Rakesh Kaundal","orcid":"https://orcid.org/0000-0001-8683-1240"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rakesh Kaundal","raw_affiliation_strings":["Bioinformatics Facility, Center for Integrated BioSystems (CIB) , Logan, UT 84322, USA","Bioinformatics Lab, Department of Plants, Soils and Climate , Logan, UT 84322, USA","Department of Computer Science, Utah State University , Logan, UT 84322, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Facility, Center for Integrated BioSystems (CIB) , Logan, UT 84322, USA","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics Lab, Department of Plants, Soils and Climate , Logan, UT 84322, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, Utah State University , Logan, UT 84322, USA","institution_ids":["https://openalex.org/I121980950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067874418"],"corresponding_institution_ids":["https://openalex.org/I121980950"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0032,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.75269974,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"37","issue":"5","first_page":"622","last_page":"624"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7168324589729309},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7011100649833679},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5918706655502319},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46693533658981323},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.437531977891922},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.42238855361938477},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4222117066383362},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3384370505809784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2811121940612793},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16353386640548706},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.0947754979133606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7168324589729309},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7011100649833679},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5918706655502319},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46693533658981323},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.437531977891922},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.42238855361938477},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4222117066383362},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3384370505809784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2811121940612793},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16353386640548706},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0947754979133606},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btaa862","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa862","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3832752201","display_name":null,"funder_award_id":"2016-70016-24781","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G4447593260","display_name":null,"funder_award_id":"#A40071","funder_id":"https://openalex.org/F4320309198","funder_display_name":"Utah State University"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320309198","display_name":"Utah State University","ror":"https://ror.org/00h6set76"},{"id":"https://openalex.org/F4320309593","display_name":"Utah Agricultural Experiment Station","ror":"https://ror.org/00h6set76"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1989277387","https://openalex.org/W2097217326","https://openalex.org/W2113019448","https://openalex.org/W2126498993","https://openalex.org/W2167869241","https://openalex.org/W2465613542","https://openalex.org/W2537623931","https://openalex.org/W2758437023","https://openalex.org/W2768528779","https://openalex.org/W3098119651","https://openalex.org/W4237335579"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2070401501","https://openalex.org/W2121496884","https://openalex.org/W2387910809"],"abstract_inverted_index":{"Abstract":[0],"Motivation":[1],"Understanding":[2],"the":[3,27,42,50,107,120,130,147,157,197,200],"mechanisms":[4],"underlying":[5],"infectious":[6,47,204],"diseases":[7],"is":[8,49,76,140,211],"fundamental":[9],"to":[10,21,53,70,87,128,189],"develop":[11,54],"prevention":[12],"strategies.":[13],"Host\u2013pathogen":[14],"interactions":[15],"(HPIs)":[16],"are":[17,39,164,221],"actively":[18],"studied":[19],"worldwide":[20],"find":[22],"potential":[23],"genomic":[24],"targets":[25],"for":[26],"development":[28],"of":[29,84,94,111,122,150,202],"novel":[30,72],"drugs,":[31],"vaccines":[32],"and":[33,74,89,109,124,135,169,193,207],"other":[34],"therapeutics.":[35],"Determining":[36],"which":[37,81,172],"proteins":[38],"involved":[40],"in":[41,114,132,166,199],"interaction":[43,112],"system":[44],"behind":[45],"an":[46,55,167,186],"process":[48],"first":[51],"step":[52],"efficient":[56],"disease":[57],"control":[58],"strategy.":[59],"Very":[60],"few":[61],"computational":[62],"methods":[63],"have":[64],"been":[65],"implemented":[66],"as":[67,159,161,185],"web":[68,117],"services":[69],"infer":[71],"HPIs,":[73],"there":[75],"not":[77],"a":[78,91,101,115],"single":[79,116],"framework":[80,103],"combines":[82],"several":[83],"those":[85],"approaches":[86],"produce":[88],"visualize":[90],"comprehensive":[92],"analysis":[93],"HPIs.":[95],"Results":[96],"Here,":[97],"we":[98],"introduce":[99],"PredHPI,":[100],"powerful":[102],"that":[104],"integrates":[105],"both":[106,156],"detection":[108],"visualization":[110],"networks":[113],"service,":[118],"facilitating":[119],"apprehension":[121],"model":[123],"non-model":[125],"host\u2013pathogen":[126],"systems":[127],"aid":[129],"biologists":[131,192],"building":[133],"hypotheses":[134],"designing":[136],"appropriate":[137],"experiments.":[138],"PredHPI":[139,182,209],"built":[141],"on":[142,146],"high-performance":[143],"computing":[144],"resources":[145],"backend":[148],"capable":[149],"handling":[151],"proteome-scale":[152],"sequence":[153],"data":[154,220],"from":[155],"host":[158],"well":[160],"pathogen.":[162],"Data":[163],"displayed":[165],"information-rich":[168],"interactive":[170],"visualization,":[171],"can":[173],"be":[174],"further":[175],"customized":[176],"with":[177],"user-defined":[178],"layouts.":[179],"We":[180],"believe":[181],"will":[183,194],"serve":[184],"invaluable":[187],"resource":[188],"diverse":[190],"experimental":[191],"help":[195],"advance":[196],"research":[198],"understanding":[201],"complex":[203],"diseases.":[205],"Availability":[206],"implementation":[208],"tool":[210],"freely":[212],"available":[213,222],"at":[214,223],"http://bioinfo.usu.edu/PredHPI/.":[215],"Supplementary":[216],"information":[217],"Sup":[218],"plementary":[219],"Bioinformatics":[224],"online.":[225]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2020-10-15T00:00:00"}
