{"id":"https://openalex.org/W3090217015","doi":"https://doi.org/10.1093/bioinformatics/btaa850","title":"Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps","display_name":"Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps","publication_year":2020,"publication_date":"2020-09-18","ids":{"openalex":"https://openalex.org/W3090217015","doi":"https://doi.org/10.1093/bioinformatics/btaa850","mag":"3090217015","pmid":"https://pubmed.ncbi.nlm.nih.gov/33010165"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa850","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/10/1475/38663820/btaa850.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/10/1475/38663820/btaa850.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062979397","display_name":"Hasan Balc\u0131","orcid":"https://orcid.org/0000-0001-8319-7758"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Hasan Balci","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063270370","display_name":"Metin Can Siper","orcid":"https://orcid.org/0000-0002-7556-093X"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR","US"],"is_corresponding":false,"raw_author_name":"Metin Can Siper","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]},{"raw_affiliation_string":"Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050072548","display_name":"Nasim Saleh","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Nasim Saleh","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062395632","display_name":"Ilkin Safarli","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]},{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["TR","US"],"is_corresponding":false,"raw_author_name":"Ilkin Safarli","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","University of Utah Visualization Design Lab, School of Computing, , Salt Lake City, UT 84112, USA"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]},{"raw_affiliation_string":"University of Utah Visualization Design Lab, School of Computing, , Salt Lake City, UT 84112, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044453232","display_name":"Ludovic Roy","orcid":"https://orcid.org/0000-0001-6940-874X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]},{"id":"https://openalex.org/I4387930247","display_name":"European Institute for Systems Biology and Medicine","ror":"https://ror.org/04f927797","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387930247"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Roy","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France","institution_ids":["https://openalex.org/I4210161906","https://openalex.org/I100532134","https://openalex.org/I4387930247","https://openalex.org/I154526488","https://openalex.org/I1294671590","https://openalex.org/I113428412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062783604","display_name":"Merve Kilicarslan","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Merve Kilicarslan","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040322363","display_name":"Rumeysa Ozaydin","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Rumeysa Ozaydin","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044361124","display_name":"Alexander Mazein","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]},{"id":"https://openalex.org/I4387930247","display_name":"European Institute for Systems Biology and Medicine","ror":"https://ror.org/04f927797","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387930247"]}],"countries":["FR","LU"],"is_corresponding":false,"raw_author_name":"Alexander Mazein","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France","University of Luxembourg Luxembourg Centre for Systems Biomedicine, , L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France","institution_ids":["https://openalex.org/I4210161906","https://openalex.org/I100532134","https://openalex.org/I4387930247","https://openalex.org/I154526488","https://openalex.org/I1294671590","https://openalex.org/I113428412"]},{"raw_affiliation_string":"University of Luxembourg Luxembourg Centre for Systems Biomedicine, , L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055008823","display_name":"Charles Auffray","orcid":"https://orcid.org/0000-0003-2226-7411"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]},{"id":"https://openalex.org/I4387930247","display_name":"European Institute for Systems Biology and Medicine","ror":"https://ror.org/04f927797","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387930247"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Charles Auffray","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 69007 Lyon, France","institution_ids":["https://openalex.org/I4210161906","https://openalex.org/I100532134","https://openalex.org/I4387930247","https://openalex.org/I154526488","https://openalex.org/I1294671590","https://openalex.org/I113428412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006448195","display_name":"\u00d6zg\u00fcn Babur","orcid":"https://orcid.org/0000-0002-0239-5259"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I33434090","display_name":"University of Massachusetts Boston","ror":"https://ror.org/04ydmy275","country_code":"US","type":"education","lineage":["https://openalex.org/I33434090"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"\u00d6zg\u00fcn Babur","raw_affiliation_strings":["Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","University of Massachusetts Boston Computer Science Department, , Boston, MA 02125, USA"],"affiliations":[{"raw_affiliation_string":"Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"University of Massachusetts Boston Computer Science Department, , Boston, MA 02125, USA","institution_ids":["https://openalex.org/I33434090"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037803004","display_name":"Emek Demir","orcid":"https://orcid.org/0000-0002-3663-7113"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emek Demir","raw_affiliation_strings":["Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA"],"affiliations":[{"raw_affiliation_string":"Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University , Portland, OR 97239, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006798669","display_name":"U\u011fur Do\u011frus\u00f6z","orcid":"https://orcid.org/0000-0002-7153-0784"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Ugur Dogrusoz","raw_affiliation_strings":["Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey"],"affiliations":[{"raw_affiliation_string":"Bilkent University i-Vis Research Lab, Computer Engineering Department, , Ankara 06800, Turkey","institution_ids":["https://openalex.org/I168864056"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5006798669"],"corresponding_institution_ids":["https://openalex.org/I168864056"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.8169,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.91727043,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"10","first_page":"1475","last_page":"1477"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7254038453102112},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.42995941638946533},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42411893606185913},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35254043340682983},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3388327956199646},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33177486062049866},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.32140135765075684},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12233087420463562}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7254038453102112},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.42995941638946533},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42411893606185913},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35254043340682983},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3388327956199646},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33177486062049866},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.32140135765075684},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12233087420463562}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012455","descriptor_name":"Salamandridae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012455","descriptor_name":"Salamandridae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012455","descriptor_name":"Salamandridae","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa850","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/10/1475/38663820/btaa850.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33010165","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33010165","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:orbilu.uni.lu:10993/57476","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/57476","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 37 (10), 1475 - 1477 (2021-06-16)","raw_type":"peer reviewed"},{"id":"pmh:oai:repository.bilkent.edu.tr:11693/77236","is_oa":false,"landing_page_url":"http://hdl.handle.net/11693/77236","pdf_url":null,"source":{"id":"https://openalex.org/S4306400079","display_name":"Bilkent University Institutional Repository (Bilkent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168864056","host_organization_name":"Bilkent University","host_organization_lineage":["https://openalex.org/I168864056"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa850","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/10/1475/38663820/btaa850.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5853623636","display_name":null,"funder_award_id":"5180088","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"},{"id":"https://openalex.org/G8429629245","display_name":null,"funder_award_id":"118E131","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3090217015.pdf","grobid_xml":"https://content.openalex.org/works/W3090217015.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1665355332","https://openalex.org/W1969709265","https://openalex.org/W1973661008","https://openalex.org/W2003067785","https://openalex.org/W2028133290","https://openalex.org/W2066081314","https://openalex.org/W2069157810","https://openalex.org/W2081211779","https://openalex.org/W2117364474","https://openalex.org/W2134185611","https://openalex.org/W2140947746","https://openalex.org/W2148129999","https://openalex.org/W2150908245","https://openalex.org/W2163993275","https://openalex.org/W2337774877","https://openalex.org/W2767914218","https://openalex.org/W2807285899","https://openalex.org/W2943893178","https://openalex.org/W2981350712","https://openalex.org/W3000501949","https://openalex.org/W6768806997"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W372519479","https://openalex.org/W2356683864","https://openalex.org/W2418025259","https://openalex.org/W2567146498","https://openalex.org/W2992616518","https://openalex.org/W4404632376","https://openalex.org/W835181104","https://openalex.org/W261395716","https://openalex.org/W2736583656"],"abstract_inverted_index":{"Newt's":[0],"source":[1],"code":[2],"is":[3],"publicly":[4],"available":[5],"on":[6,17,22,25],"GitHub":[7],"and":[8,24],"freely":[9],"distributed":[10],"under":[11],"the":[12],"GNU":[13],"LGPL.":[14],"Ample":[15],"documentation":[16],"Newt":[18],"can":[19],"be":[20],"found":[21],"http://newteditor.org":[23],"YouTube.":[26]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}