{"id":"https://openalex.org/W3088624469","doi":"https://doi.org/10.1093/bioinformatics/btaa837","title":"BERTMeSH: deep contextual representation learning for large-scale high-performance MeSH indexing with full text","display_name":"BERTMeSH: deep contextual representation learning for large-scale high-performance MeSH indexing with full text","publication_year":2020,"publication_date":"2020-09-11","ids":{"openalex":"https://openalex.org/W3088624469","doi":"https://doi.org/10.1093/bioinformatics/btaa837","mag":"3088624469","pmid":"https://pubmed.ncbi.nlm.nih.gov/32976559"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa837","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa837","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.aalto.fi/en/publications/78a2ebd7-16d0-4cd2-bae0-94e79a1874b9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015677036","display_name":"Ronghui You","orcid":"https://orcid.org/0000-0002-7608-4867"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ronghui You","raw_affiliation_strings":["School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460411","display_name":"Yuxuan Liu","orcid":"https://orcid.org/0000-0002-9607-0518"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxuan Liu","raw_affiliation_strings":["School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI","JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University , Uji, Japan","Department of Computer Science, Aalto University , Espoo, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University , Uji, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Department of Computer Science, Aalto University , Espoo, Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045866167","display_name":"Shanfeng Zhu","orcid":"https://orcid.org/0000-0002-6067-5312"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shanfeng Zhu","raw_affiliation_strings":["Bio-Med Big Data Center, Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Science, Chinese Academy of Sciences , Shanghai 200031, China","Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms , Shanghai 200433, China","Ministry of Education, Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University , Shanghai 200433, China","School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-Med Big Data Center, Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Science, Chinese Academy of Sciences , Shanghai 200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms , Shanghai 200433, China","institution_ids":[]},{"raw_affiliation_string":"Ministry of Education, Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University , Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045866167"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I4210096013"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.034,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.87544666,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"5","first_page":"684","last_page":"692"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9107999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9107999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.023399999365210533,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.020999999716877937,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7919331192970276},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7373266220092773},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6422832608222961},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5059239268302917},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4975633919239044},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.43299925327301025},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4212527871131897},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3777047395706177},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.07467037439346313}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7919331192970276},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7373266220092773},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6422832608222961},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5059239268302917},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4975633919239044},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.43299925327301025},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4212527871131897},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3777047395706177},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.07467037439346313},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa837","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa837","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32976559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32976559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/115812","is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/78a2ebd7-16d0-4cd2-bae0-94e79a1874b9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401663","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/115812","is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/78a2ebd7-16d0-4cd2-bae0-94e79a1874b9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401663","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1767995656","display_name":"\u5927\u89c4\u6a21\u751f\u7269\u533b\u5b66\u6587\u732e\u533b\u5b66\u4e3b\u9898\u8bcd\u7684\u9ad8\u7cbe\u5ea6\u81ea\u52a8\u6807\u6ce8\u7814\u7a76","funder_award_id":"61572139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G431525478","display_name":null,"funder_award_id":"JPMJAC1503","funder_id":"https://openalex.org/F4320320907","funder_display_name":"Japan Science and Technology Corporation"},{"id":"https://openalex.org/G471215394","display_name":"Efficient estimation of data structure from multiple tensors","funder_award_id":"19H04169","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6060234","display_name":"\u5927\u89c4\u6a21\u86cb\u767d\u8d28\u529f\u80fd\u9884\u6d4b\u7684\u9ad8\u6548\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61872094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6370758788","display_name":null,"funder_award_id":"B18015","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"}],"funders":[{"id":"https://openalex.org/F4320320907","display_name":"Japan Science and Technology Corporation","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1981208470","https://openalex.org/W2025103722","https://openalex.org/W2041005615","https://openalex.org/W2044986849","https://openalex.org/W2064675550","https://openalex.org/W2096525273","https://openalex.org/W2101626488","https://openalex.org/W2132220874","https://openalex.org/W2141072099","https://openalex.org/W2142955026","https://openalex.org/W2160171761","https://openalex.org/W2168022112","https://openalex.org/W2428528690","https://openalex.org/W2589937067","https://openalex.org/W2606900069","https://openalex.org/W2911489562","https://openalex.org/W2920882081","https://openalex.org/W2933436187","https://openalex.org/W2964121744","https://openalex.org/W2979576300","https://openalex.org/W3015468748","https://openalex.org/W4248735723","https://openalex.org/W6631190155","https://openalex.org/W6683709678","https://openalex.org/W6776048684"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W2130160813","https://openalex.org/W2054476758","https://openalex.org/W2350613701","https://openalex.org/W2000569830","https://openalex.org/W4237510188"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,20,57,89,188,215],"rapid":[3],"increase":[4],"of":[5,107,138,172,179,195,218],"biomedical":[6],"articles,":[7],"large-scale":[8,24],"automatic":[9],"Medical":[10],"Subject":[11],"Headings":[12],"(MeSH)":[13],"indexing":[14,26,72],"has":[15,85],"become":[16],"increasingly":[17],"important.":[18],"FullMeSH,":[19,213],"only":[21,50],"method":[22],"for":[23,78,115,167],"MeSH":[25,71],"with":[27,146,187],"full":[28,52,67,82,108,118,131,156],"text,":[29],"suffers":[30],"from":[31,98],"three":[32],"major":[33],"drawbacks:":[34],"FullMeSH":[35,186],"(i)":[36,88],"uses":[37],"Learning":[38],"To":[39],"Rank,":[40],"which":[41,75,101,181],"is":[42,76],"time-consuming,":[43],"(ii)":[44,110],"can":[45],"capture":[46,104],"some":[47],"pre-defined":[48],"sections":[49],"in":[51,81,120,133,158],"text":[53,68,119],"and":[54,69,124,126,129,151],"(iii)":[55],"ignores":[56],"whole":[58],"MEDLINE":[59,149],"database.":[60],"RESULTS:":[61],"We":[62],"propose":[63],"a":[64,176],"computationally":[65],"lighter,":[66],"deep-learning-based":[70],"method,":[73],"BERTMeSH,":[74,204],"flexible":[77],"section":[79],"organization":[80],"text.":[83,109],"BERTMeSH":[84,103,143,160,174],"two":[86],"technologies:":[87],"state-of-the-art":[90],"pre-trained":[91,145],"deep":[92,105],"contextual":[93],"representation,":[94],"Bidirectional":[95],"Encoder":[96],"Representations":[97],"Transformers":[99],"(BERT),":[100],"makes":[102],"semantics":[106],"A":[111],"transfer":[112],"learning":[113],"strategy":[114],"using":[116],"both":[117],"PubMed":[121],"Central":[122],"(PMC)":[123],"title":[125],"abstract":[127],"(only":[128],"no":[130],"text)":[132],"MEDLINE,":[134],"to":[135],"take":[136],"advantages":[137],"both.":[139],"In":[140],"our":[141],"experiments,":[142],"was":[144,182],"3":[147],"million":[148,155],"citations":[150],"trained":[152],"on":[153],"\u223c1.5":[154],"texts":[157],"PMC.":[159],"outperformed":[161],"various":[162],"cutting-edge":[163],"baselines.":[164],"For":[165],"example,":[166],"20":[168,196],"K":[169,197],"test":[170,198],"articles":[171,199],"PMC,":[173],"achieved":[175],"Micro":[177],"F-measure":[178],"69.2%,":[180],"6.3%":[183],"higher":[184],"than":[185,209],"difference":[189],"being":[190],"statistically":[191],"significant.":[192],"Also":[193],"prediction":[194],"needed":[200],"5":[201],"min":[202],"by":[203,212],"while":[205],"it":[206],"took":[207],"more":[208],"10":[210],"h":[211],"proving":[214],"computational":[216],"efficiency":[217],"BERTMeSH.":[219],"SUPPLEMENTARY":[220],"INFORMATION:":[221],"Supplementary":[222],"data":[223],"are":[224],"available":[225],"at":[226],"Bioinformatics":[227],"online.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-10T07:45:09.275182","created_date":"2025-10-10T00:00:00"}
