{"id":"https://openalex.org/W3116164920","doi":"https://doi.org/10.1093/bioinformatics/btaa809","title":"Feasible-metabolic-pathway-exploration technique using chemical latent space","display_name":"Feasible-metabolic-pathway-exploration technique using chemical latent space","publication_year":2020,"publication_date":"2020-09-09","ids":{"openalex":"https://openalex.org/W3116164920","doi":"https://doi.org/10.1093/bioinformatics/btaa809","mag":"3116164920","pmid":"https://pubmed.ncbi.nlm.nih.gov/33381845"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa809","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa809","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i770/35337293/btaa809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i770/35337293/btaa809.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058774445","display_name":"Taiki Fuji","orcid":"https://orcid.org/0000-0002-6014-8897"},"institutions":[{"id":"https://openalex.org/I116465919","display_name":"Kogakuin University","ror":"https://ror.org/01wc2tq75","country_code":"JP","type":"education","lineage":["https://openalex.org/I116465919"]},{"id":"https://openalex.org/I65143321","display_name":"Hitachi (Japan)","ror":"https://ror.org/02exqgm79","country_code":"JP","type":"company","lineage":["https://openalex.org/I65143321"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Taiki Fuji","raw_affiliation_strings":[", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan"],"affiliations":[{"raw_affiliation_string":", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I116465919"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020803851","display_name":"Shiori Nakazawa","orcid":"https://orcid.org/0000-0001-8179-5420"},"institutions":[{"id":"https://openalex.org/I65143321","display_name":"Hitachi (Japan)","ror":"https://ror.org/02exqgm79","country_code":"JP","type":"company","lineage":["https://openalex.org/I65143321"]},{"id":"https://openalex.org/I116465919","display_name":"Kogakuin University","ror":"https://ror.org/01wc2tq75","country_code":"JP","type":"education","lineage":["https://openalex.org/I116465919"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shiori Nakazawa","raw_affiliation_strings":[", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan"],"affiliations":[{"raw_affiliation_string":", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I116465919"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054839416","display_name":"Kiyoto Ito","orcid":"https://orcid.org/0000-0002-2243-5756"},"institutions":[{"id":"https://openalex.org/I65143321","display_name":"Hitachi (Japan)","ror":"https://ror.org/02exqgm79","country_code":"JP","type":"company","lineage":["https://openalex.org/I65143321"]},{"id":"https://openalex.org/I116465919","display_name":"Kogakuin University","ror":"https://ror.org/01wc2tq75","country_code":"JP","type":"education","lineage":["https://openalex.org/I116465919"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kiyoto Ito","raw_affiliation_strings":[", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan"],"affiliations":[{"raw_affiliation_string":", Hitachi, Ltd. , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group , Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I116465919"]},{"raw_affiliation_string":"Center for Exploratory Research, Research and Development Group, Hitachi, Ltd., Kokubunji-shi, Tokyo 185-8601, Japan","institution_ids":["https://openalex.org/I65143321"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054839416","https://openalex.org/A5058774445"],"corresponding_institution_ids":["https://openalex.org/I116465919","https://openalex.org/I65143321"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4173,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.61356991,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"Supplement_2","first_page":"i770","last_page":"i778"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.7133976221084595},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6425831913948059},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6378378868103027},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.5617403388023376},{"id":"https://openalex.org/keywords/bioproduction","display_name":"Bioproduction","score":0.5511927604675293},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.44045892357826233},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3754519522190094},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3674103617668152},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30851587653160095},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.23713627457618713},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.1983679234981537},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11873370409011841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10872399806976318},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0876065194606781}],"concepts":[{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.7133976221084595},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6425831913948059},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6378378868103027},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.5617403388023376},{"id":"https://openalex.org/C2779227428","wikidata":"https://www.wikidata.org/wiki/Q4915219","display_name":"Bioproduction","level":2,"score":0.5511927604675293},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.44045892357826233},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3754519522190094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3674103617668152},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30851587653160095},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.23713627457618713},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.1983679234981537},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11873370409011841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10872399806976318},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0876065194606781}],"mesh":[{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002384","descriptor_name":"Catalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa809","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa809","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i770/35337293/btaa809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33381845","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33381845","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:7346932","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8454040","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8454040","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8454040","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa809","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa809","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i770/35337293/btaa809.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321034","display_name":"New Energy and Industrial Technology Development Organization","ror":"https://ror.org/0055k7a87"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3116164920.pdf","grobid_xml":"https://content.openalex.org/works/W3116164920.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1577825084","https://openalex.org/W1595159159","https://openalex.org/W1595350250","https://openalex.org/W1757990252","https://openalex.org/W1952732684","https://openalex.org/W1992408997","https://openalex.org/W1997996256","https://openalex.org/W2021688572","https://openalex.org/W2033377040","https://openalex.org/W2159482845","https://openalex.org/W2177317049","https://openalex.org/W2216653619","https://openalex.org/W2281122442","https://openalex.org/W2529996553","https://openalex.org/W2767088268","https://openalex.org/W2768490449","https://openalex.org/W2782584560","https://openalex.org/W2912479692","https://openalex.org/W2949078105","https://openalex.org/W3098269892","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2768588377","https://openalex.org/W4295423358","https://openalex.org/W2288677290","https://openalex.org/W2063475537","https://openalex.org/W2341681417","https://openalex.org/W1961707331","https://openalex.org/W2012938657","https://openalex.org/W2096004952","https://openalex.org/W1578136679","https://openalex.org/W2087715585"],"abstract_inverted_index":{"We":[0],"developed":[1],"a":[2,11,27],"feasible-pathway-exploration":[3],"technique":[4,71,91],"using":[5,85],"chemical":[6,39],"latent":[7,40],"space":[8,41],"obtained":[9],"from":[10,43],"deep":[12],"generative":[13,45],"model":[14],"for":[15],"compound":[16],"structures.":[17],"With":[18],"this":[19],"technique,":[20],"an":[21],"enzymatic":[22,50,67],"reaction":[23,51,75],"is":[24,60],"regarded":[25],"as":[26],"difference":[28],"vector":[29],"between":[30],"the":[31,35,44,49,55,95,100],"main":[32,36],"substrate":[33],"and":[34,58,82,104],"product":[37],"in":[38],"acquired":[42],"model.":[46],"Features":[47],"of":[48,66,102],"are":[52],"embedded":[53],"into":[54],"fixed-dimensional":[56],"vector,":[57],"it":[59],"possible":[61],"to":[62,77,94,99],"express":[63],"structural":[64],"changes":[65],"reactions":[68],"comprehensively.":[69],"The":[70,89],"also":[72],"involves":[73],"differential-evolution-based":[74],"selection":[76],"design":[78],"feasible":[79,107],"candidate":[80],"pathways":[81,97,108],"pathway":[83],"scoring":[84],"neural-network-based":[86],"reaction-possibility":[87],"prediction.":[88],"proposed":[90],"was":[92],"applied":[93],"non-registered":[96],"relevant":[98],"production":[101],"2-butanone,":[103],"successfully":[105],"explored":[106],"that":[109],"include":[110],"such":[111],"reactions.":[112]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-21T08:13:44.787528","created_date":"2025-10-10T00:00:00"}
