{"id":"https://openalex.org/W3117826685","doi":"https://doi.org/10.1093/bioinformatics/btaa794","title":"Finding orthologous gene blocks in bacteria: the\u00a0computational hardness of the problem and novel\u00a0methods to address it","display_name":"Finding orthologous gene blocks in bacteria: the\u00a0computational hardness of the problem and novel\u00a0methods to address it","publication_year":2020,"publication_date":"2020-09-07","ids":{"openalex":"https://openalex.org/W3117826685","doi":"https://doi.org/10.1093/bioinformatics/btaa794","mag":"3117826685","pmid":"https://pubmed.ncbi.nlm.nih.gov/33381825"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa794","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa794","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i668/35336994/btaa794.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i668/35336994/btaa794.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001785029","display_name":"Huy Nguyen","orcid":"https://orcid.org/0000-0002-6904-1500"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huy N Nguyen","raw_affiliation_strings":["Department of Computer Science , Iowa State University, Ames, IA 50011, USA","Department of Veterinary Microbiology and Preventive Medicine, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Veterinary Microbiology and Preventive Medicine, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006412633","display_name":"Alexey Markin","orcid":"https://orcid.org/0000-0003-3280-9050"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexey Markin","raw_affiliation_strings":["Department of Computer Science , Iowa State University, Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041597050","display_name":"Iddo Friedberg","orcid":"https://orcid.org/0000-0002-1789-8000"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iddo Friedberg","raw_affiliation_strings":["Department of Veterinary Microbiology and Preventive Medicine, Iowa State University , Ames, IA 50011, USA","Interdepartmental Program in Bioinformatics and Computational Biology, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary Microbiology and Preventive Medicine, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Interdepartmental Program in Bioinformatics and Computational Biology, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041404337","display_name":"Oliver Eulenstein","orcid":"https://orcid.org/0000-0002-5291-3798"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Oliver Eulenstein","raw_affiliation_strings":["Department of Computer Science , Iowa State University, Ames, IA 50011, USA","Interdepartmental Program in Bioinformatics and Computational Biology, Iowa State University , Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Interdepartmental Program in Bioinformatics and Computational Biology, Iowa State University , Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041404337"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0836,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.46925387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"36","issue":"Supplement_2","first_page":"i668","last_page":"i674"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.586356520652771},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5828650593757629},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5820772051811218},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5177263617515564},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5114439725875854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4601282775402069},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.4498245120048523},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.412087619304657},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38585659861564636},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35320836305618286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34372779726982117},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2495408058166504},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17741024494171143}],"concepts":[{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.586356520652771},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5828650593757629},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5820772051811218},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5177263617515564},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5114439725875854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4601282775402069},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.4498245120048523},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.412087619304657},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38585659861564636},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35320836305618286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34372779726982117},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2495408058166504},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17741024494171143},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006244","descriptor_name":"Hardness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006244","descriptor_name":"Hardness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006244","descriptor_name":"Hardness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa794","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa794","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i668/35336994/btaa794.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33381825","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33381825","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:6692834","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7773486","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7773486","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7773486","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa794","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa794","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i668/35336994/btaa794.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1400431565","display_name":null,"funder_award_id":"ABI-1551363","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1825040754","display_name":null,"funder_award_id":"1617626","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4452235272","display_name":null,"funder_award_id":"ABI-1458359","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5720491150","display_name":null,"funder_award_id":"AF-1617626","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8599959060","display_name":null,"funder_award_id":"1458359","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3117826685.pdf","grobid_xml":"https://content.openalex.org/works/W3117826685.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1913187248","https://openalex.org/W1963749370","https://openalex.org/W1964086051","https://openalex.org/W1995117714","https://openalex.org/W2008959928","https://openalex.org/W2053762233","https://openalex.org/W2070219149","https://openalex.org/W2108473040","https://openalex.org/W2151701000","https://openalex.org/W2157054705","https://openalex.org/W2157657843","https://openalex.org/W2171512516","https://openalex.org/W2242053395","https://openalex.org/W2950534703","https://openalex.org/W2951734692","https://openalex.org/W2952444689","https://openalex.org/W3032513548","https://openalex.org/W6671293183"],"related_works":["https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W2778153218","https://openalex.org/W1531601525","https://openalex.org/W1827895227","https://openalex.org/W4285104409","https://openalex.org/W4210317843","https://openalex.org/W2979334915","https://openalex.org/W1581805909","https://openalex.org/W961142965"],"abstract_inverted_index":{"The":[0],"software":[1],"and":[2,12],"data":[3],"accompanying":[4],"this":[5],"paper":[6],"are":[7],"available":[8],"under":[9],"the":[10],"GPLv3":[11],"CC0":[13],"license":[14],"respectively":[15],"on:":[16],"https://github.com/nguyenngochuy91/Relevant-Operon.":[17]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
