{"id":"https://openalex.org/W3114380322","doi":"https://doi.org/10.1093/bioinformatics/btaa790","title":"Joint epitope selection and spacer design for string-of-beads vaccines","display_name":"Joint epitope selection and spacer design for string-of-beads vaccines","publication_year":2020,"publication_date":"2020-09-07","ids":{"openalex":"https://openalex.org/W3114380322","doi":"https://doi.org/10.1093/bioinformatics/btaa790","mag":"3114380322","pmid":"https://pubmed.ncbi.nlm.nih.gov/33381831"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i643/35336930/btaa790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i643/35336930/btaa790.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067657199","display_name":"Emilio Dorigatti","orcid":"https://orcid.org/0000-0002-6829-7766"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Emilio Dorigatti","raw_affiliation_strings":["Faculty of Mathematics Informatics and Statistics, Ludwig Maximilian Universit\u00e4t , M\u00fcnchen 80333, Germany","Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics Informatics and Statistics, Ludwig Maximilian Universit\u00e4t , M\u00fcnchen 80333, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003431875","display_name":"Benjamin Schubert","orcid":"https://orcid.org/0000-0003-3412-1102"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Benjamin Schubert","raw_affiliation_strings":["Department of Mathematics, Technical University of Munich , Garching bei M\u00fcnchen 85748, Germany","Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technical University of Munich , Garching bei M\u00fcnchen 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany","institution_ids":["https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067657199"],"corresponding_institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I8204097"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5839,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.66203319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"Supplement_2","first_page":"i643","last_page":"i650"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8625583648681641},{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.8403467535972595},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6646130084991455},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.5394315123558044},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5201314091682434},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45051613450050354},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4347992241382599},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33669114112854004},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3018369674682617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25199270248413086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21046456694602966},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16870373487472534},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.15374374389648438},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13705340027809143}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8625583648681641},{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.8403467535972595},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6646130084991455},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.5394315123558044},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5201314091682434},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45051613450050354},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4347992241382599},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33669114112854004},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3018369674682617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25199270248413086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21046456694602966},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16870373487472534},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.15374374389648438},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13705340027809143},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btaa790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i643/35336930/btaa790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33381831","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33381831","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:push-zb.helmholtz-munich.de:60958","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=60958","pdf_url":"https://push-zb.helmholtz-munich.de/deliver.php?id=29413","source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 36, 2, i643-i650 (2020)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:6692831","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7773482","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:60958","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=60958","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 36, 2, i643-i650 (2020)","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7773482","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7773482","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_2/i643/35336930/btaa790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320876","display_name":"Helmholtz-Gemeinschaft","ror":"https://ror.org/0281dp749"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3114380322.pdf","grobid_xml":"https://content.openalex.org/works/W3114380322.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1515641485","https://openalex.org/W1534573459","https://openalex.org/W1675195038","https://openalex.org/W1839298807","https://openalex.org/W1977889843","https://openalex.org/W2006877285","https://openalex.org/W2007930753","https://openalex.org/W2011301426","https://openalex.org/W2027950662","https://openalex.org/W2036378811","https://openalex.org/W2040270003","https://openalex.org/W2042632472","https://openalex.org/W2061939373","https://openalex.org/W2080364827","https://openalex.org/W2107665842","https://openalex.org/W2117333383","https://openalex.org/W2118617212","https://openalex.org/W2123169315","https://openalex.org/W2146292423","https://openalex.org/W2161116097","https://openalex.org/W2164128190","https://openalex.org/W2272845509","https://openalex.org/W2311949675","https://openalex.org/W2728365508","https://openalex.org/W2774113098","https://openalex.org/W2791512052","https://openalex.org/W2825912598","https://openalex.org/W2917702074","https://openalex.org/W2942484034","https://openalex.org/W2953065444","https://openalex.org/W3003257820","https://openalex.org/W3005844923","https://openalex.org/W3103145119","https://openalex.org/W4293177929","https://openalex.org/W4401946486","https://openalex.org/W6687482969"],"related_works":["https://openalex.org/W1581415616","https://openalex.org/W1552738310","https://openalex.org/W4250292386","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W2470318958","https://openalex.org/W2428121789","https://openalex.org/W1981120125","https://openalex.org/W2019183242"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
