{"id":"https://openalex.org/W3087406311","doi":"https://doi.org/10.1093/bioinformatics/btaa775","title":"HiSCF: leveraging higher-order structures for clustering analysis in biological networks","display_name":"HiSCF: leveraging higher-order structures for clustering analysis in biological networks","publication_year":2020,"publication_date":"2020-09-03","ids":{"openalex":"https://openalex.org/W3087406311","doi":"https://doi.org/10.1093/bioinformatics/btaa775","mag":"3087406311","pmid":"https://pubmed.ncbi.nlm.nih.gov/32931549"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa775","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa775","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008221100","display_name":"Lun Hu","orcid":"https://orcid.org/0000-0002-1591-8549"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lun Hu","raw_affiliation_strings":["School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China","Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science , Urumqi 830011, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China","institution_ids":["https://openalex.org/I196699116"]},{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science , Urumqi 830011, China","institution_ids":["https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072629385","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-1528-1955"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031945334","display_name":"Xiangyu Pan","orcid":"https://orcid.org/0000-0002-2537-6616"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Pan","raw_affiliation_strings":["School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Wuhan University of Technology , Wuhan 430070, China","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100644375","display_name":"Hong Yan","orcid":"https://orcid.org/0000-0001-9661-3095"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hong Yan","raw_affiliation_strings":["Department of Electrical Engineering, City University of Hong Kong , Hong Kong 999077, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, City University of Hong Kong , Hong Kong 999077, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science , Urumqi 830011, China"],"affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science , Urumqi 830011, China","institution_ids":["https://openalex.org/I4210106108"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008221100","https://openalex.org/A5019805735"],"corresponding_institution_ids":["https://openalex.org/I196699116","https://openalex.org/I4210106108"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.2908,"has_fulltext":false,"cited_by_count":130,"citation_normalized_percentile":{"value":0.98176812,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"4","first_page":"542","last_page":"550"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8614296913146973},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.7519554495811462},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7430309057235718},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6235416531562805},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5665727257728577},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5625478029251099},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5617635846138},{"id":"https://openalex.org/keywords/network-motif","display_name":"Network motif","score":0.49695661664009094},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.495976060628891},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.4896572232246399},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4541158676147461},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3758317530155182},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3632246255874634},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2476283311843872},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20687702298164368},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10520580410957336},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08327049016952515}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8614296913146973},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.7519554495811462},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7430309057235718},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6235416531562805},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5665727257728577},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5625478029251099},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5617635846138},{"id":"https://openalex.org/C60723933","wikidata":"https://www.wikidata.org/wiki/Q7001080","display_name":"Network motif","level":3,"score":0.49695661664009094},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.495976060628891},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.4896572232246399},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4541158676147461},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3758317530155182},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3632246255874634},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2476283311843872},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20687702298164368},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10520580410957336},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08327049016952515},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa775","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa775","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32931549","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32931549","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6202269892","display_name":null,"funder_award_id":"61602352","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334123","display_name":"Hong Kong Institute for Data Science","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1513501940","https://openalex.org/W1971013885","https://openalex.org/W1971421925","https://openalex.org/W1973508741","https://openalex.org/W1974115302","https://openalex.org/W1974515660","https://openalex.org/W1976722121","https://openalex.org/W1987363726","https://openalex.org/W1987815409","https://openalex.org/W1999498230","https://openalex.org/W2006196684","https://openalex.org/W2047299480","https://openalex.org/W2050721857","https://openalex.org/W2082565035","https://openalex.org/W2092806862","https://openalex.org/W2093050872","https://openalex.org/W2097255042","https://openalex.org/W2107067224","https://openalex.org/W2108984616","https://openalex.org/W2112262143","https://openalex.org/W2114372893","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2118680350","https://openalex.org/W2119946908","https://openalex.org/W2125979970","https://openalex.org/W2130687290","https://openalex.org/W2136850043","https://openalex.org/W2145131787","https://openalex.org/W2148043260","https://openalex.org/W2149312834","https://openalex.org/W2156435185","https://openalex.org/W2160313295","https://openalex.org/W2166574880","https://openalex.org/W2258969095","https://openalex.org/W2470861207","https://openalex.org/W2552212095","https://openalex.org/W2563515532","https://openalex.org/W2751268302","https://openalex.org/W2795829718","https://openalex.org/W2806781084","https://openalex.org/W2913868028","https://openalex.org/W2915975108","https://openalex.org/W2943186426","https://openalex.org/W2963417420","https://openalex.org/W2964379102","https://openalex.org/W2970771711","https://openalex.org/W3015766895","https://openalex.org/W3102056589","https://openalex.org/W4205372329","https://openalex.org/W4243979784","https://openalex.org/W6762323530","https://openalex.org/W6766345603"],"related_works":["https://openalex.org/W15348386","https://openalex.org/W4385510321","https://openalex.org/W2077895977","https://openalex.org/W782572168","https://openalex.org/W2215639193","https://openalex.org/W4389148664","https://openalex.org/W2135602072","https://openalex.org/W2098027521","https://openalex.org/W3087406311","https://openalex.org/W4214598766"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":35},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
