{"id":"https://openalex.org/W3081249922","doi":"https://doi.org/10.1093/bioinformatics/btaa747","title":"aPRBind: protein\u2013RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks","display_name":"aPRBind: protein\u2013RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks","publication_year":2020,"publication_date":"2020-08-17","ids":{"openalex":"https://openalex.org/W3081249922","doi":"https://doi.org/10.1093/bioinformatics/btaa747","mag":"3081249922","pmid":"https://pubmed.ncbi.nlm.nih.gov/32821925"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa747","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa747","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100355920","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-5221-7725"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008052826","display_name":"Weikang Gong","orcid":"https://orcid.org/0000-0001-8797-784X"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weikang Gong","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101102488","display_name":"Yanpeng Zhao","orcid":"https://orcid.org/0000-0002-1048-7030"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanpeng Zhao","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102016553","display_name":"Xueqing Deng","orcid":"https://orcid.org/0000-0003-0991-6966"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xueqing Deng","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325428","display_name":"Shan Zhang","orcid":"https://orcid.org/0009-0009-4050-4063"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shan Zhang","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100781352","display_name":"Chunhua Li","orcid":"https://orcid.org/0000-0002-0895-3506"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chunhua Li","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Environmental and Life Sciences, Beijing University of Technology , Beijing 100124, China","institution_ids":["https://openalex.org/I37796252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100781352"],"corresponding_institution_ids":["https://openalex.org/I37796252"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4085,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.81294967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"37","issue":"7","first_page":"937","last_page":"942"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6892377734184265},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6234368681907654},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5536940693855286},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5287852883338928},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5242331624031067},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5213538408279419},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.487222820520401},{"id":"https://openalex.org/keywords/ab-initio","display_name":"Ab initio","score":0.4322890043258667},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40918344259262085},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.390292227268219},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3874039947986603},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.36746132373809814},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3613244891166687},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32618802785873413},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14720237255096436},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1357862949371338},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06987348198890686}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6892377734184265},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6234368681907654},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5536940693855286},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5287852883338928},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5242331624031067},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5213538408279419},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.487222820520401},{"id":"https://openalex.org/C2781442258","wikidata":"https://www.wikidata.org/wiki/Q46310","display_name":"Ab initio","level":2,"score":0.4322890043258667},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40918344259262085},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.390292227268219},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3874039947986603},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.36746132373809814},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3613244891166687},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32618802785873413},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14720237255096436},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1357862949371338},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06987348198890686},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa747","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa747","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32821925","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32821925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5657665892","display_name":null,"funder_award_id":"31971180","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6829676010","display_name":null,"funder_award_id":"11474013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1967293793","https://openalex.org/W1981991480","https://openalex.org/W1987134040","https://openalex.org/W2007922755","https://openalex.org/W2011441819","https://openalex.org/W2040155197","https://openalex.org/W2043338013","https://openalex.org/W2044877050","https://openalex.org/W2072228739","https://openalex.org/W2073229442","https://openalex.org/W2073424121","https://openalex.org/W2076563297","https://openalex.org/W2079873244","https://openalex.org/W2089621332","https://openalex.org/W2094173044","https://openalex.org/W2097694646","https://openalex.org/W2101017457","https://openalex.org/W2103505761","https://openalex.org/W2104785011","https://openalex.org/W2110160246","https://openalex.org/W2113424035","https://openalex.org/W2115540209","https://openalex.org/W2116498086","https://openalex.org/W2119493141","https://openalex.org/W2119948329","https://openalex.org/W2139895148","https://openalex.org/W2149982649","https://openalex.org/W2154053567","https://openalex.org/W2156215828","https://openalex.org/W2161671472","https://openalex.org/W2168055922","https://openalex.org/W2261527505","https://openalex.org/W2412450565","https://openalex.org/W2472994153","https://openalex.org/W2474016806","https://openalex.org/W2475686134","https://openalex.org/W2582543740","https://openalex.org/W2607268717","https://openalex.org/W2774453250","https://openalex.org/W2923071023","https://openalex.org/W3012611954","https://openalex.org/W3106930452"],"related_works":["https://openalex.org/W2369659612","https://openalex.org/W2058542300","https://openalex.org/W2946599741","https://openalex.org/W2163891396","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2043066834","https://openalex.org/W1564749278"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
