{"id":"https://openalex.org/W3049037524","doi":"https://doi.org/10.1093/bioinformatics/btaa720","title":"Isolating structural errors in reaction networks in systems biology","display_name":"Isolating structural errors in reaction networks in systems biology","publication_year":2020,"publication_date":"2020-07-13","ids":{"openalex":"https://openalex.org/W3049037524","doi":"https://doi.org/10.1093/bioinformatics/btaa720","mag":"3049037524","pmid":"https://pubmed.ncbi.nlm.nih.gov/32790862"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/388/37218486/btaa720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/388/37218486/btaa720.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026812944","display_name":"Woosub Shin","orcid":"https://orcid.org/0000-0002-2319-2960"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Woosub Shin","raw_affiliation_strings":["Department of Bioinformatics \u2013 BiGCaT, NUTRIM, Maastricht University , 6229 ER Maastricht, The Netherlands","eScience Institute, University of Washington , Seattle, WA 98195-5061, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics \u2013 BiGCaT, NUTRIM, Maastricht University , 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"eScience Institute, University of Washington , Seattle, WA 98195-5061, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038863305","display_name":"Joseph L. Hellerstein","orcid":"https://orcid.org/0000-0003-0802-4069"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joseph L Hellerstein","raw_affiliation_strings":["eScience Institute, University of Washington , Seattle, WA 98195-5061, USA"],"affiliations":[{"raw_affiliation_string":"eScience Institute, University of Washington , Seattle, WA 98195-5061, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038863305"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0836,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.45010826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"37","issue":"3","first_page":"388","last_page":"395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/moiety","display_name":"Moiety","score":0.8073222637176514},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.673263430595398},{"id":"https://openalex.org/keywords/stoichiometry","display_name":"Stoichiometry","score":0.4907933175563812},{"id":"https://openalex.org/keywords/isolation","display_name":"Isolation (microbiology)","score":0.47513464093208313},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.4344542622566223},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4338507652282715},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.36559736728668213},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.359785795211792},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3556096851825714},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.27523073554039},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10887685418128967},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.1061113178730011},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0824975073337555}],"concepts":[{"id":"https://openalex.org/C2776568683","wikidata":"https://www.wikidata.org/wiki/Q23005640","display_name":"Moiety","level":2,"score":0.8073222637176514},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.673263430595398},{"id":"https://openalex.org/C144082473","wikidata":"https://www.wikidata.org/wiki/Q213185","display_name":"Stoichiometry","level":2,"score":0.4907933175563812},{"id":"https://openalex.org/C2775941552","wikidata":"https://www.wikidata.org/wiki/Q25212305","display_name":"Isolation (microbiology)","level":2,"score":0.47513464093208313},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.4344542622566223},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4338507652282715},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.36559736728668213},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.359785795211792},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3556096851825714},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.27523073554039},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10887685418128967},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.1061113178730011},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0824975073337555}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/388/37218486/btaa720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32790862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32790862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/b504f06f-a293-4dcf-9310-af635a013709","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/b504f06f-a293-4dcf-9310-af635a013709","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Shin, W & Hellerstein, J L 2021, 'Isolating structural errors in reaction networks in systems biology', Bioinformatics, vol. 37, no. 3, pp. 388-395. https://doi.org/10.1093/bioinformatics/btaa720","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:8058775","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8058775","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/388/37218486/btaa720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6257941761","display_name":null,"funder_award_id":"#3835","funder_id":"https://openalex.org/F4320306151","funder_display_name":"Alfred P. Sloan Foundation"},{"id":"https://openalex.org/G7217096144","display_name":null,"funder_award_id":"#2013-10-29","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"}],"funders":[{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320306854","display_name":"Washington Research Foundation","ror":"https://ror.org/00hasdx88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3049037524.pdf","grobid_xml":"https://content.openalex.org/works/W3049037524.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W391578156","https://openalex.org/W1568658445","https://openalex.org/W1745503682","https://openalex.org/W1910839236","https://openalex.org/W1995808589","https://openalex.org/W2025083491","https://openalex.org/W2046653743","https://openalex.org/W2083224653","https://openalex.org/W2096248361","https://openalex.org/W2103017472","https://openalex.org/W2121519590","https://openalex.org/W2129325583","https://openalex.org/W2133938042","https://openalex.org/W2159712408","https://openalex.org/W2202347610","https://openalex.org/W2228538196","https://openalex.org/W2241238536","https://openalex.org/W2272415328","https://openalex.org/W2485914614","https://openalex.org/W2610857016","https://openalex.org/W2762019694","https://openalex.org/W2765869690","https://openalex.org/W2788254992","https://openalex.org/W2789128799","https://openalex.org/W2920140146","https://openalex.org/W2951113250","https://openalex.org/W2971666547","https://openalex.org/W2973074478","https://openalex.org/W2987028578","https://openalex.org/W2988361147","https://openalex.org/W3010629926","https://openalex.org/W3027823215","https://openalex.org/W4233659707","https://openalex.org/W6690388969","https://openalex.org/W6770172025","https://openalex.org/W6770460946"],"related_works":["https://openalex.org/W2376082430","https://openalex.org/W2299503928","https://openalex.org/W2074857616","https://openalex.org/W2390476533","https://openalex.org/W4210408838","https://openalex.org/W1480924375","https://openalex.org/W2890264855","https://openalex.org/W1967409193","https://openalex.org/W2951828435","https://openalex.org/W2362471872"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
