{"id":"https://openalex.org/W3049347638","doi":"https://doi.org/10.1093/bioinformatics/btaa719","title":"RabbitQC: high-speed scalable quality control for sequencing data","display_name":"RabbitQC: high-speed scalable quality control for sequencing data","publication_year":2020,"publication_date":"2020-08-08","ids":{"openalex":"https://openalex.org/W3049347638","doi":"https://doi.org/10.1093/bioinformatics/btaa719","mag":"3049347638","pmid":"https://pubmed.ncbi.nlm.nih.gov/32790850"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/4/573/37757568/btaa719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/4/573/37757568/btaa719.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091033464","display_name":"Zekun Yin","orcid":"https://orcid.org/0000-0001-6002-0028"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zekun Yin","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China","Shenzhen Research Institute of Shandong University , Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0001-6002-0028","affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Shenzhen Research Institute of Shandong University , Shenzhen, China","institution_ids":["https://openalex.org/I4210105229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100779648","display_name":"Hao Zhang","orcid":"https://orcid.org/0000-0001-9548-5239"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Zhang","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080764902","display_name":"Meiyang Liu","orcid":"https://orcid.org/0000-0002-4950-3894"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiyang Liu","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068586602","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0002-3442-7235"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079765223","display_name":"Hong-Lei Song","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honglei Song","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110799964","display_name":"Haidong Lan","orcid":"https://orcid.org/0000-0002-5231-4015"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haidong Lan","raw_affiliation_strings":["Tencent AI Lab , Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tencent AI Lab , Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences , Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences , Shenzhen, China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008702128","display_name":"Beifang Niu","orcid":"https://orcid.org/0000-0002-7448-7793"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Beifang Niu","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences , Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["Institute for Computer Science, Johannes Gutenberg University , Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Johannes Gutenberg University , Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100620772","display_name":"Weiguo Liu","orcid":"https://orcid.org/0000-0001-8834-0453"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weiguo Liu","raw_affiliation_strings":["School of Software, Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5091033464","https://openalex.org/A5100620772","https://openalex.org/A5100779648"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I4210105229"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5835,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.65367712,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"4","first_page":"573","last_page":"574"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6814000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6814000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.1429000049829483,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.016699999570846558,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8408703207969666},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7331129312515259},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6778044104576111},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5309609174728394},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5249483585357666},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5126763582229614},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48209598660469055},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.4405101537704468},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.4347061812877655},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.43434906005859375},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4030853509902954},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.269257128238678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1511366367340088},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1410798728466034},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.11523288488388062},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10961496829986572}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8408703207969666},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7331129312515259},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6778044104576111},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5309609174728394},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5249483585357666},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5126763582229614},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48209598660469055},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4405101537704468},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.4347061812877655},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.43434906005859375},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4030853509902954},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.269257128238678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1511366367340088},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1410798728466034},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.11523288488388062},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10961496829986572},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/4/573/37757568/btaa719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32790850","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32790850","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa719","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa719","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/4/573/37757568/btaa719.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4140447210","display_name":"\u9762\u5411\u8d85\u5927\u89c4\u6a21\u77ed\u8bfb\u751f\u7269\u5e8f\u5217\u6570\u636e\u7684\u9ad8\u6027\u80fd\u5339\u914d\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61972231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4521563595","display_name":null,"funder_award_id":"U1806205","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G676396973","display_name":null,"funder_award_id":"JCYJ20180507182818013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320311026","display_name":"Shandong University","ror":"https://ror.org/0207yh398"},{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320328788","display_name":"Polit National Laboratory for Marine Science and Technology","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3049347638.pdf","grobid_xml":"https://content.openalex.org/works/W3049347638.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2036897871","https://openalex.org/W2131271579","https://openalex.org/W2598066557","https://openalex.org/W2951278111","https://openalex.org/W2951912016"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"MOTIVATION:":[0],"Modern":[1],"sequencing":[2,83],"technologies":[3,84],"continue":[4],"to":[5,26,40,49,99],"revolutionize":[6],"many":[7],"areas":[8],"of":[9,45,71,78],"biology":[10],"and":[11,80,88,95,108],"medicine.":[12],"Since":[13],"the":[14,43],"generated":[15],"datasets":[16],"are":[17,36,110,118],"error-prone,":[18],"downstream":[19],"applications":[20],"usually":[21],"require":[22],"quality":[23,60],"control":[24,61],"methods":[25],"pre-process":[27],"FASTQ":[28,64],"files.":[29],"However,":[30],"existing":[31],"tools":[32],"for":[33,63],"this":[34],"task":[35],"currently":[37],"not":[38],"able":[39],"fully":[41],"exploit":[42],"capabilities":[44],"computing":[46],"platforms":[47],"leading":[48],"slow":[50],"runtimes.":[51],"RESULTS:":[52],"We":[53],"present":[54],"RabbitQC,":[55],"an":[56],"extremely":[57],"fast":[58],"integrated":[59],"tool":[62],"files,":[65],"which":[66],"can":[67],"take":[68],"full":[69],"advantage":[70],"modern":[72],"hardware.":[73],"It":[74],"includes":[75],"a":[76],"variety":[77],"operations":[79],"supports":[81],"different":[82],"(Illumina,":[85],"Oxford":[86],"Nanopore":[87],"PacBio).":[89],"RabbitQC":[90],"achieves":[91],"speedups":[92],"between":[93],"one":[94],"two":[96],"orders-of-magnitude":[97],"compared":[98],"other":[100],"state-of-the-art":[101],"tools.":[102],"AVAILABILITY":[103],"AND":[104],"IMPLEMENTATION:":[105],"C++":[106],"sources":[107],"binaries":[109],"available":[111,119],"at":[112,120],"https://github.com/ZekunYin/RabbitQC.":[113],"SUPPLEMENTARY":[114],"INFORMATION:":[115],"Supplementary":[116],"data":[117],"Bioinformatics":[121],"online.":[122]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
