{"id":"https://openalex.org/W3014589900","doi":"https://doi.org/10.1093/bioinformatics/btaa698","title":"Evaluating recommender systems for AI-driven biomedical informatics","display_name":"Evaluating recommender systems for AI-driven biomedical informatics","publication_year":2020,"publication_date":"2020-08-04","ids":{"openalex":"https://openalex.org/W3014589900","doi":"https://doi.org/10.1093/bioinformatics/btaa698","mag":"3014589900","pmid":"https://pubmed.ncbi.nlm.nih.gov/32766825"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa698","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa698","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/2/250/37174527/btaa698.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/2/250/37174527/btaa698.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002465837","display_name":"William La Cava","orcid":"https://orcid.org/0000-0002-1332-2960"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William La Cava","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":"https://orcid.org/0000-0002-1332-2960","affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103222064","display_name":"Heather Williams","orcid":"https://orcid.org/0000-0002-5079-1328"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Heather Williams","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073641543","display_name":"Weixuan Fu","orcid":"https://orcid.org/0000-0002-6434-5468"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weixuan Fu","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034893943","display_name":"Steve Vitale","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steve Vitale","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009657265","display_name":"Durga Srivatsan","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Durga Srivatsan","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032971510","display_name":"Jason H. Moore","orcid":"https://orcid.org/0000-0002-5015-1099"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason H Moore","raw_affiliation_strings":["University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pennsylvania Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, , Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1354,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.53275172,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"2","first_page":"250","last_page":"256"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.487199991941452,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.487199991941452,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10203","display_name":"Recommender Systems and Techniques","score":0.08739999681711197,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.08370000123977661,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.8101966381072998},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8044927716255188},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7748799324035645},{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.6306278109550476}],"concepts":[{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.8101966381072998},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8044927716255188},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7748799324035645},{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.6306278109550476}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D048088","descriptor_name":"Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btaa698","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa698","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/2/250/37174527/btaa698.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32766825","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32766825","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8055228","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8055228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:arXiv.org:1905.09205","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.09205","pdf_url":"https://arxiv.org/pdf/1905.09205","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3014589900","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1905.09205v4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1905.09205","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1905.09205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa698","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa698","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/2/250/37174527/btaa698.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1783201165","display_name":null,"funder_award_id":"UC4 DK112217","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3354869222","display_name":null,"funder_award_id":"R01 AI116794","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4706438170","display_name":null,"funder_award_id":"R01 LM010098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5549406967","display_name":null,"funder_award_id":"UL1 TR001878","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6304463231","display_name":null,"funder_award_id":"P30 ES013508","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7693031630","display_name":null,"funder_award_id":"K99 LM012926-02","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W60686164","https://openalex.org/W116375701","https://openalex.org/W174106550","https://openalex.org/W1507030697","https://openalex.org/W1629473008","https://openalex.org/W1943063538","https://openalex.org/W1988139567","https://openalex.org/W1994389483","https://openalex.org/W2020631728","https://openalex.org/W2040367556","https://openalex.org/W2084150578","https://openalex.org/W2112364454","https://openalex.org/W2132862423","https://openalex.org/W2136944193","https://openalex.org/W2158515176","https://openalex.org/W2167467747","https://openalex.org/W2172249709","https://openalex.org/W2182361439","https://openalex.org/W2280404143","https://openalex.org/W2289525833","https://openalex.org/W2309832917","https://openalex.org/W2341535507","https://openalex.org/W2396881363","https://openalex.org/W2549852851","https://openalex.org/W2563364594","https://openalex.org/W2593649365","https://openalex.org/W2597505554","https://openalex.org/W2608595939","https://openalex.org/W2614794251","https://openalex.org/W2616602896","https://openalex.org/W2755210032","https://openalex.org/W2886899115","https://openalex.org/W2887612286","https://openalex.org/W2911964244","https://openalex.org/W2962919028","https://openalex.org/W2963905884","https://openalex.org/W3047010778","https://openalex.org/W3101973032","https://openalex.org/W6671783555","https://openalex.org/W6736610077"],"related_works":["https://openalex.org/W2990299124","https://openalex.org/W3091681699","https://openalex.org/W3110270973","https://openalex.org/W2912709207","https://openalex.org/W3037965416","https://openalex.org/W2401651341","https://openalex.org/W3141364680","https://openalex.org/W2473394283","https://openalex.org/W2413645148","https://openalex.org/W3002596471","https://openalex.org/W2996061341","https://openalex.org/W2896728112","https://openalex.org/W2352638752","https://openalex.org/W3036700482","https://openalex.org/W3004348291","https://openalex.org/W3196596949","https://openalex.org/W2799803262","https://openalex.org/W2012750824","https://openalex.org/W3146523516","https://openalex.org/W2995201943"],"abstract_inverted_index":{"MOTIVATION:":[0],"Many":[1],"researchers":[2],"with":[3,187,223,231],"domain":[4],"expertise":[5],"are":[6,262],"unable":[7],"to":[8,14,19,34,46,68,82,86,95,135,144,204],"easily":[9],"apply":[10,49],"machine":[11],"learning":[12,226],"(ML)":[13],"their":[15],"bioinformatics":[16],"data":[17,61,261],"due":[18],"a":[20,56,64,97,213],"lack":[21],"of":[22,58,90,148,174,194,206,243],"ML":[23,36,190,215],"and/or":[24],"coding":[25],"expertise.":[26],"Methods":[27],"that":[28,102,158,219],"have":[29,76],"been":[30],"proposed":[31,183],"thus":[32],"far":[33],"automate":[35],"mostly":[37],"require":[38],"programming":[39],"experience":[40],"as":[41,43,117,119],"well":[42,118],"expert":[44],"knowledge":[45],"tune":[47],"and":[48,72,93,105,245],"the":[50,110,114,172,209,251],"algorithms":[51],"correctly.":[52],"Here,":[53],"we":[54,126,140],"study":[55],"method":[57],"automating":[59,167],"biomedical":[60,91],"science":[62],"using":[63],"web-based":[65],"AI":[66,100,184],"platform":[67],"recommend":[69],"model":[70,216],"choices":[71],"conduct":[73,106,127],"experiments.":[74],"We":[75,156],"two":[77],"goals":[78],"in":[79,151,179,192],"mind:":[80],"first,":[81],"make":[83],"it":[84],"easy":[85],"construct":[87],"sophisticated":[88],"models":[89,147],"processes;":[92],"second,":[94],"provide":[96],"fully":[98],"automated":[99,137,189],"agent":[101],"can":[103],"choose":[104],"promising":[107],"experiments":[108,116],"for":[109,166,199,228],"user,":[111],"based":[112],"on":[113,130,221],"user's":[115],"prior":[120],"knowledge.":[121],"To":[122],"validate":[123],"this":[124,142,229],"framework,":[125],"an":[128],"experiment":[129],"165":[131],"classification":[132],"problems,":[133],"comparing":[134],"state-of-the-art,":[136],"approaches.":[138],"Finally,":[139],"use":[141],"tool":[143],"develop":[145],"predictive":[146],"septic":[149,207],"shock":[150],"critical":[152],"care":[153],"patients.":[154],"RESULTS:":[155],"find":[157],"matrix":[159],"factorization-based":[160],"recommendation":[161],"systems":[162,177],"outperform":[163],"metalearning":[164],"methods":[165,191],"ML.":[168],"This":[169],"result":[170],"mirrors":[171],"results":[173,227],"earlier":[175],"recommender":[176],"research":[178],"other":[180],"domains.":[181],"The":[182],"is":[185,240,248],"competitive":[186],"state-of-the-art":[188,224],"terms":[193],"choosing":[195],"optimal":[196],"algorithm":[197],"configurations":[198],"datasets.":[200],"In":[201],"our":[202],"application":[203],"prediction":[205],"shock,":[208],"AI-driven":[210],"analysis":[211],"produces":[212],"competent":[214],"(AUROC":[217],"0.85\u00b10.02)":[218],"performs":[220],"par":[222],"deep":[225],"task,":[230],"much":[232],"less":[233],"computational":[234],"effort.":[235],"AVAILABILITY":[236],"AND":[237],"IMPLEMENTATION:":[238],"PennAI":[239],"available":[241,263],"free":[242],"charge":[244],"open-source.":[246],"It":[247],"distributed":[249],"under":[250],"GNU":[252],"public":[253],"license":[254],"(GPL)":[255],"version":[256],"3.":[257],"SUPPLEMENTARY":[258],"INFORMATION:":[259],"Supplementary":[260],"at":[264],"Bioinformatics":[265],"online.":[266]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
