{"id":"https://openalex.org/W3046454618","doi":"https://doi.org/10.1093/bioinformatics/btaa687","title":"Dream: powerful differential expression analysis for repeated measures designs","display_name":"Dream: powerful differential expression analysis for repeated measures designs","publication_year":2020,"publication_date":"2020-07-23","ids":{"openalex":"https://openalex.org/W3046454618","doi":"https://doi.org/10.1093/bioinformatics/btaa687","mag":"3046454618","pmid":"https://pubmed.ncbi.nlm.nih.gov/32730587"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa687","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa687","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8055218","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046862823","display_name":"Gabriel E. Hoffman","orcid":"https://orcid.org/0000-0002-0957-0224"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gabriel E Hoffman","raw_affiliation_strings":["Icahn School of Medicine at Mount Sinai Department of Genetics and Genomic Sciences, , New York, NY 10029, USA","Icahn School of Medicine at Mount Sinai Icahn Institute for Data Science and Genomic Technology, , New York, NY 10029, USA","Icahn School of Medicine at Mount Sinai Pamela Sklar Division of Psychiatric Genomics, , New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Department of Genetics and Genomic Sciences, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Icahn Institute for Data Science and Genomic Technology, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Pamela Sklar Division of Psychiatric Genomics, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074488210","display_name":"Panos Roussos","orcid":"https://orcid.org/0000-0002-4640-6239"},"institutions":[{"id":"https://openalex.org/I4210116369","display_name":"James J. Peters VA Medical Center","ror":"https://ror.org/02c8hpe74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210094901","https://openalex.org/I4210116369"]},{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Panos Roussos","raw_affiliation_strings":["Icahn School of Medicine at Mount Sinai Department of Genetics and Genomic Sciences, , New York, NY 10029, USA","Icahn School of Medicine at Mount Sinai Department of Psychiatry, , New York, NY 10029, USA","Icahn School of Medicine at Mount Sinai Icahn Institute for Data Science and Genomic Technology, , New York, NY 10029, USA","Icahn School of Medicine at Mount Sinai Pamela Sklar Division of Psychiatric Genomics, , New York, NY 10029, USA","Mental Illness Research, Education, and Clinical Center (VISN 2 South), James J. Peters VA Medical Center , Bronx, NY 10468, USA"],"affiliations":[{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Department of Genetics and Genomic Sciences, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Department of Psychiatry, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Icahn Institute for Data Science and Genomic Technology, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai Pamela Sklar Division of Psychiatric Genomics, , New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]},{"raw_affiliation_string":"Mental Illness Research, Education, and Clinical Center (VISN 2 South), James J. Peters VA Medical Center , Bronx, NY 10468, USA","institution_ids":["https://openalex.org/I4210116369"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046862823"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":13.2084,"has_fulltext":false,"cited_by_count":320,"citation_normalized_percentile":{"value":0.99362146,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"37","issue":"2","first_page":"192","last_page":"201"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9175577163696289},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.6388205289840698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5862404108047485},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.582042396068573},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5546452403068542},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5434880256652832},{"id":"https://openalex.org/keywords/multiple-comparisons-problem","display_name":"Multiple comparisons problem","score":0.49596962332725525},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.4781549870967865},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.4626164734363556},{"id":"https://openalex.org/keywords/trait","display_name":"Trait","score":0.43345725536346436},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.42955440282821655},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4121948480606079},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40189069509506226},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3519662022590637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3008266091346741},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2972366213798523},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15042364597320557},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14072391390800476},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13490372896194458},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10343211889266968}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9175577163696289},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.6388205289840698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5862404108047485},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.582042396068573},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5546452403068542},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5434880256652832},{"id":"https://openalex.org/C183905921","wikidata":"https://www.wikidata.org/wiki/Q1038757","display_name":"Multiple comparisons problem","level":2,"score":0.49596962332725525},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.4781549870967865},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.4626164734363556},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.43345725536346436},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.42955440282821655},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4121948480606079},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40189069509506226},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3519662022590637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3008266091346741},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2972366213798523},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15042364597320557},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14072391390800476},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13490372896194458},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10343211889266968},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa687","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa687","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32730587","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32730587","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8055218","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8055218","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8055218","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8055218","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1327529060","display_name":null,"funder_award_id":"R01AG050986","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G1496609009","display_name":null,"funder_award_id":"R01MH109897","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G6683488957","display_name":null,"funder_award_id":"U01MH116442","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G6729528702","display_name":null,"funder_award_id":"R01MH109677","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8718519598","display_name":null,"funder_award_id":"R01MH110921","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"}],"funders":[{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W1587094587","https://openalex.org/W1607202247","https://openalex.org/W1768523798","https://openalex.org/W1887050506","https://openalex.org/W1901919421","https://openalex.org/W1951724000","https://openalex.org/W1981747359","https://openalex.org/W1999574084","https://openalex.org/W2028033268","https://openalex.org/W2033105784","https://openalex.org/W2033877733","https://openalex.org/W2041673787","https://openalex.org/W2048612325","https://openalex.org/W2056798725","https://openalex.org/W2064503573","https://openalex.org/W2069638100","https://openalex.org/W2081098333","https://openalex.org/W2082246284","https://openalex.org/W2083115265","https://openalex.org/W2107060225","https://openalex.org/W2107665951","https://openalex.org/W2112220625","https://openalex.org/W2114104545","https://openalex.org/W2115779804","https://openalex.org/W2127274965","https://openalex.org/W2137499573","https://openalex.org/W2137526110","https://openalex.org/W2138207763","https://openalex.org/W2142415307","https://openalex.org/W2144961623","https://openalex.org/W2146512944","https://openalex.org/W2154175400","https://openalex.org/W2164690942","https://openalex.org/W2179438025","https://openalex.org/W2209106767","https://openalex.org/W2323326409","https://openalex.org/W2324191961","https://openalex.org/W2508591721","https://openalex.org/W2526546796","https://openalex.org/W2566843361","https://openalex.org/W2592811885","https://openalex.org/W2596068614","https://openalex.org/W2604490956","https://openalex.org/W2610537770","https://openalex.org/W2620721366","https://openalex.org/W2623260545","https://openalex.org/W2761275051","https://openalex.org/W2773591768","https://openalex.org/W2774486220","https://openalex.org/W2780155440","https://openalex.org/W2785443776","https://openalex.org/W2790720651","https://openalex.org/W2794458614","https://openalex.org/W2883810206","https://openalex.org/W2889790826","https://openalex.org/W2895675303","https://openalex.org/W2925184855","https://openalex.org/W2948257170","https://openalex.org/W2949644565","https://openalex.org/W2950371985","https://openalex.org/W2950758817","https://openalex.org/W2952240264","https://openalex.org/W2995364014","https://openalex.org/W2997833976","https://openalex.org/W3027339180","https://openalex.org/W4206439534","https://openalex.org/W4299687266"],"related_works":["https://openalex.org/W4293336298","https://openalex.org/W2467227750","https://openalex.org/W2093104131","https://openalex.org/W2178204436","https://openalex.org/W4300887971","https://openalex.org/W2189374991","https://openalex.org/W2787695989","https://openalex.org/W2171537806","https://openalex.org/W2792883187","https://openalex.org/W2098339479"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":68},{"year":2024,"cited_by_count":80},{"year":2023,"cited_by_count":59},{"year":2022,"cited_by_count":42},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
