{"id":"https://openalex.org/W3046305467","doi":"https://doi.org/10.1093/bioinformatics/btaa686","title":"Persistent minimal sequences of SARS-CoV-2","display_name":"Persistent minimal sequences of SARS-CoV-2","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W3046305467","doi":"https://doi.org/10.1093/bioinformatics/btaa686","mag":"3046305467","pmid":"https://pubmed.ncbi.nlm.nih.gov/32730589"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/21/5129/50692652/btaa686.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/21/5129/50692652/btaa686.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051693451","display_name":"Diogo Pratas","orcid":"https://orcid.org/0000-0003-1176-552X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["FI","PT"],"is_corresponding":true,"raw_author_name":"Diogo Pratas","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics, University of Aveiro , Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal","Department of Virology, University of Helsinki , 00014 Helsinki, Finland","Institute of Electronics and Informatics Engineering of Aveiro , 3810-193 Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics, University of Aveiro , Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Department of Virology, University of Helsinki , 00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Institute of Electronics and Informatics Engineering of Aveiro , 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030051009","display_name":"Jorge Miguel Silva","orcid":"https://orcid.org/0000-0002-6331-6091"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jorge M Silva","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics, University of Aveiro , Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal","Institute of Electronics and Informatics Engineering of Aveiro , 3810-193 Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics, University of Aveiro , Campus Universit\u00e1rio de Santiago, 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Institute of Electronics and Informatics Engineering of Aveiro , 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051693451"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I60858718"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2555,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.68593754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"21","first_page":"5129","last_page":"5132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11581","display_name":"Viral Infections and Outbreaks Research","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6872988343238831},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6104155778884888},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5805747509002686},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5243445038795471},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4808579087257385},{"id":"https://openalex.org/keywords/gc-content","display_name":"GC-content","score":0.46132320165634155},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4465022683143616},{"id":"https://openalex.org/keywords/ebola-virus","display_name":"Ebola virus","score":0.44039663672447205},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4291796088218689},{"id":"https://openalex.org/keywords/outbreak","display_name":"Outbreak","score":0.4186423718929291},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.41805875301361084},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3756590485572815},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.347024142742157},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.2964481711387634},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17298808693885803},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14138036966323853},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.1354736089706421}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6872988343238831},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6104155778884888},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5805747509002686},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5243445038795471},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4808579087257385},{"id":"https://openalex.org/C42251679","wikidata":"https://www.wikidata.org/wiki/Q933491","display_name":"GC-content","level":4,"score":0.46132320165634155},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4465022683143616},{"id":"https://openalex.org/C2777469322","wikidata":"https://www.wikidata.org/wiki/Q8064876","display_name":"Ebola virus","level":3,"score":0.44039663672447205},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4291796088218689},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.4186423718929291},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.41805875301361084},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3756590485572815},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.347024142742157},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2964481711387634},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17298808693885803},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14138036966323853},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.1354736089706421},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/21/5129/50692652/btaa686.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32730589","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32730589","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1763796","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1763796","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7559010","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7559010","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/21/5129/50692652/btaa686.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8399999737739563,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1886981331","display_name":null,"funder_award_id":"project UID","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3272457656","display_name":null,"funder_award_id":"UIDB/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5732873362","display_name":null,"funder_award_id":"UIDB/00127/202","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6131202956","display_name":null,"funder_award_id":"SFRH/BD/141851/2018","funder_id":"https://openalex.org/F4320337197","funder_display_name":"Nuclear Fuel Cycle and Supply Chain"},{"id":"https://openalex.org/G6147775995","display_name":null,"funder_award_id":"UIDB/00127/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6560736340","display_name":null,"funder_award_id":"UIDB/00127/2020","funder_id":"https://openalex.org/F4320337197","funder_display_name":"Nuclear Fuel Cycle and Supply Chain"},{"id":"https://openalex.org/G724804869","display_name":null,"funder_award_id":"SFRH/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320337197","display_name":"Nuclear Fuel Cycle and Supply Chain","ror":"https://ror.org/05tj7dm33"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3046305467.pdf","grobid_xml":"https://content.openalex.org/works/W3046305467.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W2006514054","https://openalex.org/W2021341670","https://openalex.org/W2023034125","https://openalex.org/W2052987310","https://openalex.org/W2075847813","https://openalex.org/W2108234281","https://openalex.org/W2114504162","https://openalex.org/W2114820744","https://openalex.org/W2127363306","https://openalex.org/W2132260239","https://openalex.org/W2138565200","https://openalex.org/W2147533449","https://openalex.org/W2150392267","https://openalex.org/W2159076566","https://openalex.org/W2166867592","https://openalex.org/W2170551349","https://openalex.org/W2559317808","https://openalex.org/W2607082035","https://openalex.org/W2804822363","https://openalex.org/W2962807110","https://openalex.org/W2972112905","https://openalex.org/W3001118548","https://openalex.org/W3001465255","https://openalex.org/W3002108456","https://openalex.org/W3003217347","https://openalex.org/W3004280078","https://openalex.org/W3006645647","https://openalex.org/W3007643904","https://openalex.org/W3009723094","https://openalex.org/W3010126769","https://openalex.org/W3011127849","https://openalex.org/W3012424007","https://openalex.org/W3014989172","https://openalex.org/W3017630886"],"related_works":["https://openalex.org/W2373635223","https://openalex.org/W2412355096","https://openalex.org/W1990012352","https://openalex.org/W2431766951","https://openalex.org/W4385969441","https://openalex.org/W127458931","https://openalex.org/W4311732436","https://openalex.org/W3005192309","https://openalex.org/W4392809784","https://openalex.org/W1998744609"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
