{"id":"https://openalex.org/W3046214778","doi":"https://doi.org/10.1093/bioinformatics/btaa683","title":"Hive Panel Explorer: an interactive network visualization tool","display_name":"Hive Panel Explorer: an interactive network visualization tool","publication_year":2020,"publication_date":"2020-07-22","ids":{"openalex":"https://openalex.org/W3046214778","doi":"https://doi.org/10.1093/bioinformatics/btaa683","mag":"3046214778","pmid":"https://pubmed.ncbi.nlm.nih.gov/32717050"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btaa683","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085352607","display_name":"Sarah Perez","orcid":"https://orcid.org/0000-0002-8855-0255"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sarah E I Perez","raw_affiliation_strings":["Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055521337","display_name":"Aria S Hahn","orcid":"https://orcid.org/0000-0001-6105-7172"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aria S Hahn","raw_affiliation_strings":["Department of Microbiology & Immunology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada"],"raw_orcid":"https://orcid.org/0000-0001-6105-7172","affiliations":[{"raw_affiliation_string":"Department of Microbiology & Immunology, University of British Columbia , Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105781772","display_name":"Martin Krzywinski","orcid":"https://orcid.org/0009-0005-5785-3631"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martin Krzywinski","raw_affiliation_strings":["Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101411528","display_name":"Steven Hallam","orcid":"https://orcid.org/0000-0002-4889-6876"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Steven J Hallam","raw_affiliation_strings":["ECOSCOPE Training Program, University of British Columbia , Vancouver, BC V6T 1Z3, Canada","Genome Science and Technology Program, University of British Columbia , Vancouver, BC V6T 1Z4, Canada","Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada","Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ECOSCOPE Training Program, University of British Columbia , Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Genome Science and Technology Program, University of British Columbia , Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]},{"raw_affiliation_string":"Genome Sciences Centre, BC Cancer Agency , Vancouver, BC V5Z 4S6, Canada","institution_ids":["https://openalex.org/I1289530486"]},{"raw_affiliation_string":"Graduate Program in Bioinformatics, University of British Columbia, Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada","institution_ids":["https://openalex.org/I4210132220","https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101411528"],"corresponding_institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I141945490","https://openalex.org/I4210132220"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0834,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.4480483,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"3","first_page":"436","last_page":"437"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.19269999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.19269999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12643","display_name":"Sustainability and Ecological Systems Analysis","score":0.08070000261068344,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.05979999899864197,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7708285450935364},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7677345871925354},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.6107931137084961},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.582835853099823},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5798312425613403},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5382905006408691},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5351496934890747},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4759119153022766},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46021971106529236},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4540865421295166},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4199441075325012},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3345777988433838},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12366759777069092},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08240276575088501}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7708285450935364},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7677345871925354},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.6107931137084961},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.582835853099823},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5798312425613403},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5382905006408691},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5351496934890747},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4759119153022766},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46021971106529236},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4540865421295166},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4199441075325012},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3345777988433838},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12366759777069092},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08240276575088501},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32717050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32717050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8058766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8058766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa683","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W183411541","https://openalex.org/W2035092181","https://openalex.org/W2128965269","https://openalex.org/W2135415614","https://openalex.org/W2608627859","https://openalex.org/W2771514310"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2006240110","https://openalex.org/W2751110224","https://openalex.org/W2147036980","https://openalex.org/W1510524001","https://openalex.org/W1973315673","https://openalex.org/W2520625499","https://openalex.org/W2996372188","https://openalex.org/W2131473689","https://openalex.org/W2771576151"],"abstract_inverted_index":{"MOTIVATION:":[0],"Networks":[1],"are":[2,118],"used":[3],"to":[4,8,45],"relate":[5],"topological":[6],"structure":[7],"system":[9],"dynamics":[10],"and":[11,41,49,79],"function,":[12],"particularly":[13],"in":[14],"ecology":[15],"systems":[16],"biology.":[17],"Network":[18],"analysis":[19],"is":[20,107],"often":[21],"guided":[22],"or":[23],"complemented":[24],"by":[25,92],"data-driven":[26],"visualization.":[27],"Hive":[28,56],"one":[29],"of":[30,66,84],"many":[31],"network":[32,72,86,97],"visualizations,":[33],"distinguish":[34],"themselves":[35],"as":[36],"providing":[37],"a":[38,59,64,94],"general,":[39],"consistent":[40],"coherent":[42],"rule-based":[43],"representation":[44],"motivate":[46],"hypothesis":[47],"development":[48],"testing.":[50],"RESULTS:":[51],"Here,":[52],"we":[53],"present":[54],"HyPE,":[55],"Panel":[57],"Explorer,":[58],"software":[60],"application":[61],"that":[62],"creates":[63],"panel":[65],"interactive":[67],"hive":[68],"plots.":[69],"HyPE":[70,106],"enables":[71],"exploration":[73],"based":[74],"on":[75],"user-driven":[76],"layout":[77],"rules":[78],"parameter":[80],"combinations":[81],"for":[82],"simultaneous":[83],"multiple":[85],"views.":[87],"We":[88],"demonstrate":[89],"HyPE's":[90],"features":[91],"exploring":[93],"microbial":[95],"co-occurrence":[96],"constructed":[98],"from":[99],"forest":[100],"soil":[101],"microbiomes.":[102],"AVAILABILITY":[103],"AND":[104],"IMPLEMENTATION:":[105],"available":[108,119],"under":[109],"the":[110],"GNU":[111],"license:":[112],"https://github.com/hallamlab/HivePanelExplorer.":[113],"SUPPLEMENTARY":[114],"INFORMATION:":[115],"Supplementary":[116],"data":[117],"at":[120],"Bioinformatics":[121],"online.":[122]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
