{"id":"https://openalex.org/W3046012219","doi":"https://doi.org/10.1093/bioinformatics/btaa681","title":"SCORE: Smart Consensus Of RNA Expression\u2014a consensus tool for detecting differentially expressed genes in bacteria","display_name":"SCORE: Smart Consensus Of RNA Expression\u2014a consensus tool for detecting differentially expressed genes in bacteria","publication_year":2020,"publication_date":"2020-07-24","ids":{"openalex":"https://openalex.org/W3046012219","doi":"https://doi.org/10.1093/bioinformatics/btaa681","mag":"3046012219","pmid":"https://pubmed.ncbi.nlm.nih.gov/32717040"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/426/37218635/btaa681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/426/37218635/btaa681.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046410859","display_name":"Silver A. Wolf","orcid":null},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Silver A Wolf","raw_affiliation_strings":["Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067364162","display_name":"Lennard Epping","orcid":"https://orcid.org/0000-0003-2031-8991"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lennard Epping","raw_affiliation_strings":["Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074757485","display_name":"Sandro Andreotti","orcid":"https://orcid.org/0000-0001-7678-9720"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sandro Andreotti","raw_affiliation_strings":["Freie Universit\u00e4t Department of Mathematics and Computer Science, , Berlin 14195, Germany"],"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Department of Mathematics and Computer Science, , Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078948324","display_name":"Knut Reinert","orcid":"https://orcid.org/0000-0003-3078-8129"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Knut Reinert","raw_affiliation_strings":["Freie Universit\u00e4t Department of Mathematics and Computer Science, , Berlin 14195, Germany"],"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Department of Mathematics and Computer Science, , Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069362866","display_name":"Torsten Semmler","orcid":"https://orcid.org/0000-0002-2225-7267"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Torsten Semmler","raw_affiliation_strings":["Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Microbial Genomics, Robert Koch Institute , Berlin 13353, Germany","institution_ids":["https://openalex.org/I24359323"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069362866"],"corresponding_institution_ids":["https://openalex.org/I24359323"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.4402684,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"3","first_page":"426","last_page":"428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5908675193786621},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5321480631828308},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5130945444107056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4855208396911621},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.47846245765686035},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4681786596775055},{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.4550411105155945},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4076939821243286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39732852578163147},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.378306120634079},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3137747049331665},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28371861577033997},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21048504114151},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20383021235466003},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.17364001274108887},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10966292023658752}],"concepts":[{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5908675193786621},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5321480631828308},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5130945444107056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4855208396911621},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.47846245765686035},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4681786596775055},{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.4550411105155945},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4076939821243286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39732852578163147},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.378306120634079},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3137747049331665},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28371861577033997},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21048504114151},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20383021235466003},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.17364001274108887},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10966292023658752}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/426/37218635/btaa681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32717040","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32717040","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/3/426/37218635/btaa681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3046012219.pdf","grobid_xml":"https://content.openalex.org/works/W3046012219.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1974876578","https://openalex.org/W1976325156","https://openalex.org/W1989367702","https://openalex.org/W2055855260","https://openalex.org/W2110417468","https://openalex.org/W2112876600","https://openalex.org/W2114104545","https://openalex.org/W2121413434","https://openalex.org/W2138207763","https://openalex.org/W2141224543","https://openalex.org/W2146512944","https://openalex.org/W2151831732","https://openalex.org/W2154942049","https://openalex.org/W2170551349","https://openalex.org/W2179438025","https://openalex.org/W2323326409","https://openalex.org/W2432815617","https://openalex.org/W2519198604","https://openalex.org/W2620721366","https://openalex.org/W2780155440","https://openalex.org/W2952615074","https://openalex.org/W2957299798","https://openalex.org/W2964849163","https://openalex.org/W3023088732","https://openalex.org/W3030525997"],"related_works":["https://openalex.org/W4362511917","https://openalex.org/W3018634223","https://openalex.org/W2904597490","https://openalex.org/W4362530199","https://openalex.org/W4362511560","https://openalex.org/W4377231761","https://openalex.org/W4285162488","https://openalex.org/W4362512073","https://openalex.org/W4362485908","https://openalex.org/W2268123450"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
