{"id":"https://openalex.org/W3044184769","doi":"https://doi.org/10.1093/bioinformatics/btaa638","title":"AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata","display_name":"AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata","publication_year":2020,"publication_date":"2020-07-17","ids":{"openalex":"https://openalex.org/W3044184769","doi":"https://doi.org/10.1093/bioinformatics/btaa638","mag":"3044184769","pmid":"https://pubmed.ncbi.nlm.nih.gov/32702093"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa638","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa638","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041456165","display_name":"Gonzalo Neira","orcid":"https://orcid.org/0000-0003-4493-0026"},"institutions":[{"id":"https://openalex.org/I4210108487","display_name":"Fundaci\u00f3n Ciencia and Vida","ror":"https://ror.org/01p6hjg61","country_code":"CL","type":"nonprofit","lineage":["https://openalex.org/I4210108487"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Gonzalo Neira","raw_affiliation_strings":["Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile","institution_ids":["https://openalex.org/I4210108487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103036267","display_name":"Diego Cortez","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108487","display_name":"Fundaci\u00f3n Ciencia and Vida","ror":"https://ror.org/01p6hjg61","country_code":"CL","type":"nonprofit","lineage":["https://openalex.org/I4210108487"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Diego Cortez","raw_affiliation_strings":["Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile","institution_ids":["https://openalex.org/I4210108487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018382190","display_name":"Joaquin Jil","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108487","display_name":"Fundaci\u00f3n Ciencia and Vida","ror":"https://ror.org/01p6hjg61","country_code":"CL","type":"nonprofit","lineage":["https://openalex.org/I4210108487"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Joaquin Jil","raw_affiliation_strings":["Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile","institution_ids":["https://openalex.org/I4210108487"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046504376","display_name":"David S. Holmes","orcid":"https://orcid.org/0000-0001-9555-138X"},"institutions":[{"id":"https://openalex.org/I116419501","display_name":"Universidad Mayor","ror":"https://ror.org/00pn44t17","country_code":"CL","type":"education","lineage":["https://openalex.org/I116419501"]},{"id":"https://openalex.org/I3124150290","display_name":"San Sebasti\u00e1n University","ror":"https://ror.org/04jrwm652","country_code":"CL","type":"education","lineage":["https://openalex.org/I3124150290"]},{"id":"https://openalex.org/I4210108487","display_name":"Fundaci\u00f3n Ciencia and Vida","ror":"https://ror.org/01p6hjg61","country_code":"CL","type":"nonprofit","lineage":["https://openalex.org/I4210108487"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"David S Holmes","raw_affiliation_strings":["Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile","Centro de Gen\u00f3mica y Bioinform\u00e1tica, Facultad de Ciencias, Universidad Mayor , Santiago, Chile","Universidad San Sebasti\u00e1n , Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Genome Biology, Fundaci\u00f3n Ciencia & Vida , Santiago, Chile","institution_ids":["https://openalex.org/I4210108487"]},{"raw_affiliation_string":"Centro de Gen\u00f3mica y Bioinform\u00e1tica, Facultad de Ciencias, Universidad Mayor , Santiago, Chile","institution_ids":["https://openalex.org/I116419501"]},{"raw_affiliation_string":"Universidad San Sebasti\u00e1n , Santiago, Chile","institution_ids":["https://openalex.org/I3124150290"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046504376"],"corresponding_institution_ids":["https://openalex.org/I116419501","https://openalex.org/I3124150290","https://openalex.org/I4210108487"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5852,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.65258533,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"36","issue":"19","first_page":"4970","last_page":"4971"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10032","display_name":"Marine and coastal ecosystems","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7502532005310059},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6458123922348022},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.6169227361679077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6038351058959961},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5356402397155762},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4427734315395355},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4293642044067383},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4272116422653198},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4170006513595581},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4049488306045532},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3638702630996704},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3026891350746155},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3012891709804535},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20147043466567993},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.10848724842071533},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08708366751670837},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08270296454429626},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0785498321056366}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7502532005310059},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6458123922348022},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.6169227361679077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6038351058959961},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5356402397155762},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4427734315395355},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4293642044067383},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4272116422653198},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4170006513595581},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4049488306045532},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3638702630996704},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3026891350746155},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3012891709804535},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20147043466567993},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.10848724842071533},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08708366751670837},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08270296454429626},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0785498321056366},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa638","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa638","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32702093","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32702093","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G6075680574","display_name":null,"funder_award_id":"1181717","funder_id":"https://openalex.org/F4320338073","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320338073","display_name":"Fondo Nacional de Desarrollo Cient\u00edfico y Tecnol\u00f3gico","ror":"https://ror.org/02ap3w078"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2095172074","https://openalex.org/W2112364185","https://openalex.org/W2173732482","https://openalex.org/W2465248746","https://openalex.org/W2474898722","https://openalex.org/W2895532240","https://openalex.org/W4242729757"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W4384009753","https://openalex.org/W4309247532","https://openalex.org/W2791776396","https://openalex.org/W4286531993","https://openalex.org/W2964820744"],"abstract_inverted_index":{"AciDB":[0],"1.0":[1],"is":[2,11],"freely":[3],"available":[4],"online":[5],"at:":[6,17],"http://AciDB.cl.":[7],"The":[8],"source":[9],"code":[10],"released":[12],"under":[13],"an":[14],"MIT":[15],"license":[16],"https://gitlab.com/Hawkline451/acidb/.":[18]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
