{"id":"https://openalex.org/W3043509961","doi":"https://doi.org/10.1093/bioinformatics/btaa634","title":"TALC: Transcript-level Aware Long-read Correction","display_name":"TALC: Transcript-level Aware Long-read Correction","publication_year":2020,"publication_date":"2020-07-10","ids":{"openalex":"https://openalex.org/W3043509961","doi":"https://doi.org/10.1093/bioinformatics/btaa634","mag":"3043509961","pmid":"https://pubmed.ncbi.nlm.nih.gov/32910174"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5000/35065196/btaa634.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5000/35065196/btaa634.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016910721","display_name":"Lucile Broseus","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lucile Broseus","raw_affiliation_strings":["Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044517598","display_name":"Aubin Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aubin Thomas","raw_affiliation_strings":["Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027162470","display_name":"Andrew Oldfield","orcid":"https://orcid.org/0000-0002-5401-9909"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Andrew J Oldfield","raw_affiliation_strings":["Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107857642","display_name":"Dany S\u00e9verac","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095789","display_name":"Montpellier GenomiX","ror":"https://ror.org/00ts9pr54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I19894307","https://openalex.org/I4210095789","https://openalex.org/I4210096427","https://openalex.org/I4210096427","https://openalex.org/I4210156758","https://openalex.org/I4210163339"]},{"id":"https://openalex.org/I4210156758","display_name":"Institut de G\u00e9nomique Fonctionnelle","ror":"https://ror.org/043wmc583","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210156758"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dany Severac","raw_affiliation_strings":["MGX-Montpellier GenomiX, c/o Institut de G\u00e9nomique Fonctionnelle , Montpellier Cedex 5 34094, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MGX-Montpellier GenomiX, c/o Institut de G\u00e9nomique Fonctionnelle , Montpellier Cedex 5 34094, France","institution_ids":["https://openalex.org/I4210156758","https://openalex.org/I4210095789"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016574386","display_name":"Emeric Dubois","orcid":"https://orcid.org/0000-0002-6052-4178"},"institutions":[{"id":"https://openalex.org/I4210095789","display_name":"Montpellier GenomiX","ror":"https://ror.org/00ts9pr54","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I19894307","https://openalex.org/I4210095789","https://openalex.org/I4210096427","https://openalex.org/I4210096427","https://openalex.org/I4210156758","https://openalex.org/I4210163339"]},{"id":"https://openalex.org/I4210156758","display_name":"Institut de G\u00e9nomique Fonctionnelle","ror":"https://ror.org/043wmc583","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210156758"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emeric Dubois","raw_affiliation_strings":["MGX-Montpellier GenomiX, c/o Institut de G\u00e9nomique Fonctionnelle , Montpellier Cedex 5 34094, France"],"raw_orcid":"https://orcid.org/0000-0002-6052-4178","affiliations":[{"raw_affiliation_string":"MGX-Montpellier GenomiX, c/o Institut de G\u00e9nomique Fonctionnelle , Montpellier Cedex 5 34094, France","institution_ids":["https://openalex.org/I4210156758","https://openalex.org/I4210095789"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083670919","display_name":"William Ritchie","orcid":"https://orcid.org/0000-0001-8162-1439"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"William Ritchie","raw_affiliation_strings":["Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France"],"raw_orcid":"https://orcid.org/0000-0001-8162-1439","affiliations":[{"raw_affiliation_string":"Department of Genome Dynamics, Institut de G\u00e9n\u00e9tique Humaine, Centre National de la Recherche Scientifique (CNRS), Universit\u00e9 de Montpellier , Montpellier 34396, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210163339","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083670919"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210163339"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3019,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.79721423,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"20","first_page":"5000","last_page":"5006"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6000999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6000999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.22280000150203705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.0364999994635582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7442833185195923},{"id":"https://openalex.org/keywords/talc","display_name":"Talc","score":0.7355153560638428},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5664872527122498},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.5411630272865295},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.42777019739151},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.41607704758644104},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.41200700402259827},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3869464695453644},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3742293119430542},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3658497929573059},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2028956115245819},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19025138020515442},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.17911049723625183},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12940582633018494},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1266137659549713},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10155177116394043}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7442833185195923},{"id":"https://openalex.org/C2779979586","wikidata":"https://www.wikidata.org/wiki/Q134583","display_name":"Talc","level":2,"score":0.7355153560638428},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5664872527122498},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.5411630272865295},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.42777019739151},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.41607704758644104},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.41200700402259827},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3869464695453644},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3742293119430542},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3658497929573059},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2028956115245819},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19025138020515442},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.17911049723625183},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12940582633018494},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1266137659549713},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10155177116394043},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5000/35065196/btaa634.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32910174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32910174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-03070194v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03070194","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2020, 36 (20), pp.5000-5006. ⟨10.1093/bioinformatics/btaa634⟩","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa634","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5000/35065196/btaa634.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G102179115","display_name":null,"funder_award_id":"ANR-10-LABX-12-01","funder_id":"https://openalex.org/F4320330081","funder_display_name":"Laboratoire d'Excellence EpiGenMed"},{"id":"https://openalex.org/G2337407410","display_name":null,"funder_award_id":"10-LABX-12-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2465067033","display_name":null,"funder_award_id":"ANR-10-LABX-12-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3984362188","display_name":null,"funder_award_id":"ANR-10-INBS-09","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":"Institut fran\u00e7ais de bioinformatique","funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7999552054","display_name":null,"funder_award_id":"10-INBS-09","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G951583444","display_name":"Investigating widespread regulation of gene expression through intron retention","funder_award_id":"ANR-16-CE12-0007","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320330081","display_name":"Laboratoire d'Excellence EpiGenMed","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3043509961.pdf","grobid_xml":"https://content.openalex.org/works/W3043509961.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1813440684","https://openalex.org/W1941316604","https://openalex.org/W1944880632","https://openalex.org/W1986223165","https://openalex.org/W2009735916","https://openalex.org/W2041126213","https://openalex.org/W2075996757","https://openalex.org/W2096128575","https://openalex.org/W2099468911","https://openalex.org/W2104052851","https://openalex.org/W2106678197","https://openalex.org/W2121364424","https://openalex.org/W2138731994","https://openalex.org/W2140191982","https://openalex.org/W2160177274","https://openalex.org/W2166558929","https://openalex.org/W2337261418","https://openalex.org/W2346241034","https://openalex.org/W2518374209","https://openalex.org/W2558089559","https://openalex.org/W2567946107","https://openalex.org/W2589448906","https://openalex.org/W2602408874","https://openalex.org/W2604588349","https://openalex.org/W2604789968","https://openalex.org/W2607632766","https://openalex.org/W2611834782","https://openalex.org/W2731748842","https://openalex.org/W2753396470","https://openalex.org/W2762638728","https://openalex.org/W2775755225","https://openalex.org/W2775883913","https://openalex.org/W2782115451","https://openalex.org/W2789843538","https://openalex.org/W2793022686","https://openalex.org/W2793092033","https://openalex.org/W2794241885","https://openalex.org/W2807551948","https://openalex.org/W2810974113","https://openalex.org/W2890852354","https://openalex.org/W2902725523","https://openalex.org/W2906735838","https://openalex.org/W2907938228","https://openalex.org/W2909387807","https://openalex.org/W2909715374","https://openalex.org/W2917631923","https://openalex.org/W2921990535","https://openalex.org/W2923374494","https://openalex.org/W2939217416","https://openalex.org/W2945907104","https://openalex.org/W2949395034","https://openalex.org/W2950593396","https://openalex.org/W2952666313","https://openalex.org/W2953020124","https://openalex.org/W2954932330","https://openalex.org/W2955453080","https://openalex.org/W2963963068","https://openalex.org/W2965152423","https://openalex.org/W2969431118","https://openalex.org/W2977618246","https://openalex.org/W2980418819","https://openalex.org/W2986545595","https://openalex.org/W2989499631","https://openalex.org/W2995995746","https://openalex.org/W2999689892","https://openalex.org/W3004933912","https://openalex.org/W3007172120","https://openalex.org/W3007936495","https://openalex.org/W6731602015","https://openalex.org/W6747367516","https://openalex.org/W6754177122","https://openalex.org/W6770628608"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W2354744388","https://openalex.org/W3125399386","https://openalex.org/W2949121831","https://openalex.org/W1908987670","https://openalex.org/W2991626973","https://openalex.org/W4387083702","https://openalex.org/W4318940746","https://openalex.org/W2133531097"],"abstract_inverted_index":{"MOTIVATION:":[0],"Long-read":[1],"sequencing":[2,53],"technologies":[3],"are":[4,13,45,138],"invaluable":[5],"for":[6,22,48,114],"determining":[7],"complex":[8,51],"RNA":[9,73],"transcript":[10],"architectures":[11],"but":[12],"error-prone.":[14],"Numerous":[15],"'hybrid":[16],"correction'":[17],"algorithms":[18,44],"have":[19,57],"been":[20],"developed":[21],"genomic":[23],"data":[24,137],"that":[25,93,117],"correct":[26,85],"long":[27,86,119],"reads":[28,37,87],"by":[29,97],"exploiting":[30],"the":[31,40,100,103],"accuracy":[32,101],"and":[33,75,110,130],"depth":[34],"of":[35,102,106],"short":[36],"sequenced":[38],"from":[39,88],"same":[41],"sample.":[42],"These":[43],"not":[46],"suited":[47],"correcting":[49],"more":[50],"transcriptome":[52,89,115],"data.":[54],"RESULTS:":[55],"We":[56,91],"created":[58],"a":[59,79],"novel":[60],"reference-free":[61],"algorithm":[62],"called":[63],"Transcript-level":[64],"Aware":[65],"Long-Read":[66],"Correction":[67],"(TALC)":[68],"which":[69],"models":[70],"changes":[71],"in":[72,78,128],"expression":[74],"isoform":[76],"representation":[77],"weighted":[80],"De":[81],"Bruijn":[82],"graph":[83],"to":[84],"studies.":[90],"show":[92],"transcript-level":[94],"aware":[95],"correction":[96],"TALC":[98,125],"improves":[99],"whole":[104],"spectrum":[105],"downstream":[107],"RNA-seq":[108],"applications":[109],"is":[111,126],"thus":[112],"necessary":[113],"analyses":[116],"use":[118],"read":[120],"technology.":[121],"AVAILABILITY":[122],"AND":[123],"IMPLEMENTATION:":[124],"implemented":[127],"C++":[129],"available":[131,139],"at":[132,140],"https://github.com/lbroseus/TALC.":[133],"SUPPLEMENTARY":[134],"INFORMATION:":[135],"Supplementary":[136],"Bioinformatics":[141],"online.":[142]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}