{"id":"https://openalex.org/W3038577219","doi":"https://doi.org/10.1093/bioinformatics/btaa608","title":"Using AnABlast for intergenic sORF prediction in the <i>Caenorhabditis elegans</i> genome","display_name":"Using AnABlast for intergenic sORF prediction in the <i>Caenorhabditis elegans</i> genome","publication_year":2020,"publication_date":"2020-06-23","ids":{"openalex":"https://openalex.org/W3038577219","doi":"https://doi.org/10.1093/bioinformatics/btaa608","mag":"3038577219","pmid":"https://pubmed.ncbi.nlm.nih.gov/32614398"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa608","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btaa608","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081405880","display_name":"Carlos S. Casimiro\u2010Soriguer","orcid":"https://orcid.org/0000-0003-1774-2580"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C S Casimiro-Soriguer","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1774-2580","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015177308","display_name":"M M Rigual","orcid":null},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M M Rigual","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080327174","display_name":"Ana Mar\u00eda Brokate-Llanos","orcid":"https://orcid.org/0000-0001-7300-1125"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A M Brokate-Llanos","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008470429","display_name":"Manuel J. Mu\u00f1oz","orcid":"https://orcid.org/0000-0002-0111-1541"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M J Mu\u00f1oz","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102929477","display_name":"Andr\u00e9s Garz\u00f3n","orcid":"https://orcid.org/0000-0003-4299-7198"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"A Garz\u00f3n","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029314813","display_name":"Antonio J. P\u00e9rez\u2010Pulido","orcid":"https://orcid.org/0000-0003-3343-2822"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"A J P\u00e9rez-Pulido","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3343-2822","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016613070","display_name":"Juan Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-3851-7393"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J Jimenez","raw_affiliation_strings":["Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0002-3851-7393","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo (CABD, UPO-CSIC), Universidad Pablo de Olavide , 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016613070","https://openalex.org/A5029314813","https://openalex.org/A5102929477"],"corresponding_institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4068,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.58986992,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"19","first_page":"4827","last_page":"4832"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.46459999680519104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.46459999680519104,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.10360000282526016,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.07479999959468842,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.9162960052490234},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.7714501023292542},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7578338980674744},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.7296966314315796},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7015906572341919},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.6501976847648621},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5829017162322998},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5678554177284241},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4512712359428406},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4440039098262787},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.42162275314331055},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3357961177825928},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1682882010936737}],"concepts":[{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.9162960052490234},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.7714501023292542},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7578338980674744},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.7296966314315796},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7015906572341919},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.6501976847648621},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5829017162322998},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5678554177284241},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4512712359428406},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4440039098262787},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.42162275314331055},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3357961177825928},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1682882010936737}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa608","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32614398","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32614398","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.repositoriosalud.es:10668/15864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7723330/pdf","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/19/4827/34806143/btaa608.pdf","source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:digital.csic.es:10261/230509","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/230509","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:7723330","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7723330","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa608","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa608","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G2185108213","display_name":null,"funder_award_id":"BFU2016-77297-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W650106923","https://openalex.org/W1852163795","https://openalex.org/W1961449438","https://openalex.org/W2026433130","https://openalex.org/W2026980372","https://openalex.org/W2038492783","https://openalex.org/W2045447239","https://openalex.org/W2067183112","https://openalex.org/W2069006591","https://openalex.org/W2078266900","https://openalex.org/W2079263231","https://openalex.org/W2079517684","https://openalex.org/W2081090039","https://openalex.org/W2100033550","https://openalex.org/W2100365580","https://openalex.org/W2100424218","https://openalex.org/W2101746013","https://openalex.org/W2111797812","https://openalex.org/W2116955103","https://openalex.org/W2144875895","https://openalex.org/W2154139219","https://openalex.org/W2158714788","https://openalex.org/W2162417400","https://openalex.org/W2179575365","https://openalex.org/W2192733079","https://openalex.org/W2196806097","https://openalex.org/W2262417550","https://openalex.org/W2308140312","https://openalex.org/W2411831786","https://openalex.org/W2616925367","https://openalex.org/W2622239882","https://openalex.org/W2734798616","https://openalex.org/W2770089238","https://openalex.org/W2772727999","https://openalex.org/W2898402099","https://openalex.org/W2908053922","https://openalex.org/W2934487580","https://openalex.org/W2941008465","https://openalex.org/W2942159478","https://openalex.org/W2945962433","https://openalex.org/W2949189261","https://openalex.org/W2950604929","https://openalex.org/W2952183425","https://openalex.org/W2971297443","https://openalex.org/W3012047342","https://openalex.org/W3012308224","https://openalex.org/W4210702584","https://openalex.org/W4244366763","https://openalex.org/W6674905636","https://openalex.org/W6698395371"],"related_works":["https://openalex.org/W2158272128","https://openalex.org/W2110657175","https://openalex.org/W2803668885","https://openalex.org/W2160379721","https://openalex.org/W2009935171","https://openalex.org/W2144311691","https://openalex.org/W2888888553","https://openalex.org/W2051230953","https://openalex.org/W3107356192","https://openalex.org/W2146734921"],"abstract_inverted_index":{"MOTIVATION:":[0],"Short":[1],"bioactive":[2],"peptides":[3],"encoded":[4],"by":[5,47],"small":[6],"open":[7],"reading":[8,74],"frames":[9],"(sORFs)":[10],"play":[11],"important":[12],"roles":[13],"in":[14,24,61,102,142,168],"eukaryotes.":[15],"Bioinformatics":[16,182],"prediction":[17,138],"of":[18,70,79,96,129,139],"ORFs":[19,45],"is":[20,51,68,150,171],"an":[21],"early":[22],"step":[23],"a":[25,52,81,132],"genome":[26,157],"sequence":[27],"analysis,":[28],"but":[29],"sORFs":[30,101,121,141],"encoding":[31],"short":[32],"peptides,":[33,125],"often":[34],"using":[35],"non-AUG":[36],"initiation":[37],"codons,":[38],"are":[39,179],"not":[40],"easily":[41],"discriminated":[42],"from":[43],"false":[44],"occurring":[46],"chance.":[48],"RESULTS:":[49],"AnABlast":[50,80,130,149,160],"computational":[53],"tool":[54,84],"designed":[55],"to":[56,85],"highlight":[57],"putative":[58,98],"protein-coding":[59,66],"regions":[60],"genomic":[62],"DNA":[63],"sequences.":[64],"This":[65],"finder":[67],"independent":[69],"ORF":[71],"length":[72],"and":[73,113,164],"frame":[75],"shifts,":[76],"thus":[77],"making":[78],"potentially":[82],"useful":[83],"predict":[86],"sORFs.":[87],"Using":[88],"this":[89,169],"algorithm,":[90],"here,":[91],"we":[92],"report":[93],"the":[94,103,119,127,136],"identification":[95],"82":[97],"new":[99,133],"intergenic":[100,140],"Caenorhabditis":[104],"elegans":[105],"genome.":[106],"Sequence":[107],"similarity,":[108],"motif":[109],"presence,":[110],"expression":[111],"data":[112,166,178],"RNA":[114],"interference":[115],"experiments":[116],"support":[117],"that":[118],"underlined":[120],"likely":[122],"encode":[123],"functional":[124],"encouraging":[126],"use":[128],"as":[131],"approach":[134],"for":[135],"accurate":[137],"annotated":[143,162],"eukaryotic":[144],"genomes.":[145],"AVAILABILITY":[146],"AND":[147],"IMPLEMENTATION:":[148],"freely":[151],"available":[152,172,180],"at":[153,173,181],"http://www.bioinfocabd.upo.es/ab/.":[154],"The":[155],"C.elegans":[156],"browser":[158],"with":[159],"results,":[161],"genes":[163],"all":[165],"used":[167],"study":[170],"http://www.bioinfocabd.upo.es/celegans.":[174],"SUPPLEMENTARY":[175],"INFORMATION:":[176],"Supplementary":[177],"online.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2020-07-10T00:00:00"}
