{"id":"https://openalex.org/W3038694560","doi":"https://doi.org/10.1093/bioinformatics/btaa604","title":"GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form","display_name":"GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form","publication_year":2020,"publication_date":"2020-06-23","ids":{"openalex":"https://openalex.org/W3038694560","doi":"https://doi.org/10.1093/bioinformatics/btaa604","mag":"3038694560","pmid":"https://pubmed.ncbi.nlm.nih.gov/32609343"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa604","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa604","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/18/4810/34560217/btaa604.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/18/4810/34560217/btaa604.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062848398","display_name":"Qingxi Meng","orcid":"https://orcid.org/0009-0001-4037-4731"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Qingxi Meng","raw_affiliation_strings":["Department of Electrical and Computer Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045294377","display_name":"Idoia Ochoa","orcid":"https://orcid.org/0000-0003-1864-7868"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Idoia Ochoa","raw_affiliation_strings":["Department of Electrical and Computer Engineering","TECNUN School of Engineering, University of Navarra , Donostia 20018, Gipuzkoa, Spain","Department of Electrical and Computer Engineering; TECNUN School of Engineering, University of Navarra , Donostia 20018, Gipuzkoa, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering","institution_ids":[]},{"raw_affiliation_string":"TECNUN School of Engineering, University of Navarra , Donostia 20018, Gipuzkoa, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering; TECNUN School of Engineering, University of Navarra , Donostia 20018, Gipuzkoa, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044149683","display_name":"Mikel Hern\u00e1ez","orcid":"https://orcid.org/0000-0003-0443-2305"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Mikel Hernaez","raw_affiliation_strings":["CIMA Center of Applied Medical Science, University of Navarra , Pamplona 31008, Navarra, Spain","Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign , Urbana, IL 61801, USA","CIMA Center of Applied Medical Science, University of Navarra , Pamplona 31008, Navarra, Spain; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign , Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"CIMA Center of Applied Medical Science, University of Navarra , Pamplona 31008, Navarra, Spain","institution_ids":["https://openalex.org/I88155538"]},{"raw_affiliation_string":"Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign , Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"CIMA Center of Applied Medical Science, University of Navarra , Pamplona 31008, Navarra, Spain; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign , Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I88155538","https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062848398"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0829,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.43629162,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"18","first_page":"4810","last_page":"4812"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8347231149673462},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5761915445327759},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5364402532577515},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5309590697288513},{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.5174494385719299},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4404076933860779},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.41419801115989685},{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.4117496609687805},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3828291594982147},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20284229516983032},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.16417762637138367}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8347231149673462},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5761915445327759},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5364402532577515},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5309590697288513},{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.5174494385719299},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4404076933860779},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.41419801115989685},{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.4117496609687805},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3828291594982147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20284229516983032},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.16417762637138367},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa604","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa604","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/18/4810/34560217/btaa604.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32609343","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32609343","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa604","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa604","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/18/4810/34560217/btaa604.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3038694560.pdf","grobid_xml":"https://content.openalex.org/works/W3038694560.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1220385903","https://openalex.org/W2142386149","https://openalex.org/W2145061560","https://openalex.org/W2152672184","https://openalex.org/W2152882637","https://openalex.org/W2461458082","https://openalex.org/W2899586443","https://openalex.org/W6755871088"],"related_works":["https://openalex.org/W2045444909","https://openalex.org/W3153292769","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W4239210160","https://openalex.org/W2941659365","https://openalex.org/W2376300433","https://openalex.org/W2990805456","https://openalex.org/W3165395117","https://openalex.org/W4220907012"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
