{"id":"https://openalex.org/W3037355686","doi":"https://doi.org/10.1093/bioinformatics/btaa584","title":"Molywood: streamlining the design and rendering of molecular movies","display_name":"Molywood: streamlining the design and rendering of molecular movies","publication_year":2020,"publication_date":"2020-06-15","ids":{"openalex":"https://openalex.org/W3037355686","doi":"https://doi.org/10.1093/bioinformatics/btaa584","mag":"3037355686","pmid":"https://pubmed.ncbi.nlm.nih.gov/32573714"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/17/4660/40449772/btaa584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/17/4660/40449772/btaa584.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085108119","display_name":"Mi\u0142osz Wiecz\u00f3r","orcid":"https://orcid.org/0000-0003-4990-8629"},"institutions":[{"id":"https://openalex.org/I169333911","display_name":"Gda\u0144sk University of Technology","ror":"https://ror.org/006x4sc24","country_code":"PL","type":"education","lineage":["https://openalex.org/I169333911"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES","PL"],"is_corresponding":true,"raw_author_name":"Mi\u0142osz Wiecz\u00f3r","raw_affiliation_strings":["Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland","Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland","institution_ids":["https://openalex.org/I169333911"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091460370","display_name":"Gen\u00eds Bayarri","orcid":"https://orcid.org/0000-0003-0513-0288"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Genis Bayarri","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050111942","display_name":"Jacek Czub","orcid":"https://orcid.org/0000-0003-3639-6935"},"institutions":[{"id":"https://openalex.org/I169333911","display_name":"Gda\u0144sk University of Technology","ror":"https://ror.org/006x4sc24","country_code":"PL","type":"education","lineage":["https://openalex.org/I169333911"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES","PL"],"is_corresponding":false,"raw_author_name":"Jacek Czub","raw_affiliation_strings":["Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland","Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland","institution_ids":["https://openalex.org/I169333911"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I169333911","display_name":"Gda\u0144sk University of Technology","ror":"https://ror.org/006x4sc24","country_code":"PL","type":"education","lineage":["https://openalex.org/I169333911"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES","PL"],"is_corresponding":true,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["Department of Biochemistry and Biomedicine, University of Barcelona , Barcelona 08028, Spain","Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biomedicine, University of Barcelona , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]},{"raw_affiliation_string":"Department of Physical Chemistry, Gda\u0144sk University of Technology , Gda\u0144sk 80-233, Poland","institution_ids":["https://openalex.org/I169333911"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006399866","https://openalex.org/A5085108119"],"corresponding_institution_ids":["https://openalex.org/I169333911","https://openalex.org/I4210122345","https://openalex.org/I71999127"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.254,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.78990772,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"36","issue":"17","first_page":"4660","last_page":"4661"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8526169061660767},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7830842733383179},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7686646580696106},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.7014039754867554},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6313401460647583},{"id":"https://openalex.org/keywords/snapshot","display_name":"Snapshot (computer storage)","score":0.536773681640625},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.46272507309913635},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4596095085144043},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4316127300262451},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.4245688021183014},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4166381061077118},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09029945731163025},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.08661097288131714}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8526169061660767},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7830842733383179},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7686646580696106},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.7014039754867554},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6313401460647583},{"id":"https://openalex.org/C55282118","wikidata":"https://www.wikidata.org/wiki/Q252683","display_name":"Snapshot (computer storage)","level":2,"score":0.536773681640625},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.46272507309913635},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4596095085144043},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4316127300262451},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4245688021183014},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4166381061077118},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09029945731163025},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08661097288131714}],"mesh":[{"descriptor_ui":"D009040","descriptor_name":"Motion Pictures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009040","descriptor_name":"Motion Pictures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009040","descriptor_name":"Motion Pictures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/17/4660/40449772/btaa584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32573714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32573714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:diposit.ub.edu:2445/166885","is_oa":false,"landing_page_url":"http://hdl.handle.net/2445/166885","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Institut de Recerca Biom\u00e8dica (IRB Barcelona))","raw_type":"info:eu-repo/semantics/acceptedVersion"},{"id":"pmh:oai:europepmc.org:7367569","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8476162","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8476162","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8476162","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa584","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/17/4660/40449772/btaa584.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8600000143051147,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320328499","display_name":"Narodowa Agencja Wymiany Akademickiej","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3037355686.pdf","grobid_xml":"https://content.openalex.org/works/W3037355686.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1990633019","https://openalex.org/W1992412606","https://openalex.org/W2004436328","https://openalex.org/W2029667189","https://openalex.org/W2032609839"],"related_works":["https://openalex.org/W3023169329","https://openalex.org/W4389470870","https://openalex.org/W2782165897","https://openalex.org/W1582950852","https://openalex.org/W4300438041","https://openalex.org/W2054104202","https://openalex.org/W2139703748","https://openalex.org/W2761254753","https://openalex.org/W1024825291","https://openalex.org/W2188981919"],"abstract_inverted_index":{"The":[0],"script":[1],"is":[2],"freely":[3],"available":[4],"on":[5,21],"GitLab":[6],"(gitlab.com/KomBioMol/molywood)":[7],"and":[8,12,18],"PyPI":[9],"(through":[10],"pip),":[11],"features":[13],"an":[14],"extended":[15],"documentation,":[16],"tutorial":[17],"gallery":[19],"hosted":[20],"mmb.irbbarcelona.org/molywood.":[22]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
