{"id":"https://openalex.org/W3032627043","doi":"https://doi.org/10.1093/bioinformatics/btaa552","title":"AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies","display_name":"AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies","publication_year":2020,"publication_date":"2020-05-28","ids":{"openalex":"https://openalex.org/W3032627043","doi":"https://doi.org/10.1093/bioinformatics/btaa552","mag":"3032627043","pmid":"https://pubmed.ncbi.nlm.nih.gov/32484858"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa552","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa552","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4353/33796559/btaa552.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4353/33796559/btaa552.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091714061","display_name":"Pushkala Jayaraman","orcid":"https://orcid.org/0000-0003-1159-8354"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pushkala Jayaraman","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine"],"raw_orcid":"https://orcid.org/0000-0003-1159-8354","affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036283258","display_name":"Timothy L. Mosbruger","orcid":"https://orcid.org/0000-0002-9254-6531"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Timothy Mosbruger","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082725852","display_name":"Taishan Hu","orcid":"https://orcid.org/0000-0003-3940-4558"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taishan Hu","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017179546","display_name":"Nikolaos Tairis","orcid":"https://orcid.org/0000-0002-6850-3902"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nikolaos G Tairis","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073878137","display_name":"Chao Wu","orcid":"https://orcid.org/0000-0003-0181-4738"},"institutions":[{"id":"https://openalex.org/I1335321130","display_name":"Children's Hospital of Philadelphia","ror":"https://ror.org/01z7r7q48","country_code":"US","type":"funder","lineage":["https://openalex.org/I1335321130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chao Wu","raw_affiliation_strings":["Department of Biomedical Health & Informatics, The Children's Hospitals of Philadelphia , Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Health & Informatics, The Children's Hospitals of Philadelphia , Philadelphia, PA, USA","institution_ids":["https://openalex.org/I1335321130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066746784","display_name":"Peter Clark","orcid":"https://orcid.org/0000-0002-4078-1425"},"institutions":[{"id":"https://openalex.org/I1330063522","display_name":"Johnson & Johnson (United States)","ror":"https://ror.org/03qd7mz70","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522"]},{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter M Clark","raw_affiliation_strings":["Department of Research & Development, The Janssen Pharmaceutical Companies of Johnson & Johnson , Raritan, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Research & Development, The Janssen Pharmaceutical Companies of Johnson & Johnson , Raritan, NJ, USA","institution_ids":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022615535","display_name":"Monica D\u2019Arcy","orcid":"https://orcid.org/0000-0002-1586-9089"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica D\u2019Arcy","raw_affiliation_strings":["Department of Epidemiology, University of North Carolina , Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of North Carolina , Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071498799","display_name":"Deborah Ferriola","orcid":"https://orcid.org/0000-0002-5853-2523"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Deborah Ferriola","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108346085","display_name":"Katarzyna Mackiewicz","orcid":null},"institutions":[{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katarzyna Mackiewicz","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Medical University of South Carolina , Charleston, SC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Medical University of South Carolina , Charleston, SC, USA","institution_ids":["https://openalex.org/I153297377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021954849","display_name":"Xiaowu Gai","orcid":"https://orcid.org/0000-0001-8679-9703"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I1336910626","display_name":"Children's Hospital of Los Angeles","ror":"https://ror.org/00412ts95","country_code":"US","type":"funder","lineage":["https://openalex.org/I1336910626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaowu Gai","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Center for Personalized Medicine, Children\u2019s Hospital of Los Angeles , Los Angeles, CA, USA","Department of Pathology, Keck School of Medicine, University of Southern California , Los Angeles, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Center for Personalized Medicine, Children\u2019s Hospital of Los Angeles , Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1336910626"]},{"raw_affiliation_string":"Department of Pathology, Keck School of Medicine, University of Southern California , Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110918143","display_name":"Dimitrios Monos","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dimitrios Monos","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine","Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086151737","display_name":"Mahdi Sarmady","orcid":"https://orcid.org/0000-0001-6069-804X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mahdi Sarmady","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine","Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA"],"raw_orcid":"https://orcid.org/0000-0001-6069-804X","affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5086151737","https://openalex.org/A5110918143"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3249,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.55902728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"36","issue":"15","first_page":"4353","last_page":"4356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.18490000069141388,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.18490000069141388,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1354999989271164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.10570000112056732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6633864045143127},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.6574757099151611},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6499907374382019},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4500347971916199},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.343669056892395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3223291039466858},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.23925700783729553},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23512950539588928},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1030397117137909}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6633864045143127},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.6574757099151611},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6499907374382019},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4500347971916199},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.343669056892395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3223291039466858},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23925700783729553},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23512950539588928},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1030397117137909}],"mesh":[{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055028","descriptor_name":"Comparative Genomic Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055028","descriptor_name":"Comparative Genomic Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055028","descriptor_name":"Comparative Genomic Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055028","descriptor_name":"Comparative Genomic Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa552","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa552","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4353/33796559/btaa552.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32484858","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32484858","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7520035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7520035","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa552","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa552","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4353/33796559/btaa552.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2544069683","display_name":null,"funder_award_id":"P30 DK019525","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G4131178121","display_name":null,"funder_award_id":"P30DK019525","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3032627043.pdf","grobid_xml":"https://content.openalex.org/works/W3032627043.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1519185585","https://openalex.org/W1578276197","https://openalex.org/W2032880654","https://openalex.org/W2036626452","https://openalex.org/W2046137036","https://openalex.org/W2048662221","https://openalex.org/W2053654058","https://openalex.org/W2077237334","https://openalex.org/W2087287868","https://openalex.org/W2121531763","https://openalex.org/W2124464500","https://openalex.org/W2133511667","https://openalex.org/W2135995702","https://openalex.org/W2136145671","https://openalex.org/W2137167287","https://openalex.org/W2156301396","https://openalex.org/W2158480761","https://openalex.org/W2158767261","https://openalex.org/W2159038577","https://openalex.org/W2162098634","https://openalex.org/W2165145683","https://openalex.org/W2165748644","https://openalex.org/W2167372793","https://openalex.org/W2171038200","https://openalex.org/W2171396485","https://openalex.org/W2264578395","https://openalex.org/W2273606578","https://openalex.org/W2344368224","https://openalex.org/W2400250419","https://openalex.org/W2462868993","https://openalex.org/W2502569966","https://openalex.org/W2568029223","https://openalex.org/W2597100339","https://openalex.org/W2793388751","https://openalex.org/W2939679264","https://openalex.org/W2951392792","https://openalex.org/W2968499116","https://openalex.org/W3080997834","https://openalex.org/W4293196852","https://openalex.org/W6634422912","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"SUMMARY:":[0],"A":[1],"number":[2,104],"of":[3,17,28,40,50,60,65,75,88,99,105,121,123,133,154,187,214,232,239],"methods":[4],"have":[5,148],"been":[6],"devised":[7],"to":[8,43,116,127,158,198],"address":[9],"the":[10,26,48,51,63,73,100,119,131,152,182,230],"need":[11],"for":[12,56,143,163,170,209],"targeted":[13,106],"genomic":[14,45,137,173],"resequencing.":[15],"One":[16],"these":[18],"methods,":[19],"region-specific":[20,240],"extraction":[21],"(RSE)":[22],"is":[23,81,243],"characterized":[24],"by":[25,34,94,180],"capture":[27,54,130],"long":[29],"DNA":[30],"fragments":[31],"(15-20":[32],"kb)":[33],"magnetic":[35],"beads,":[36],"after":[37],"enzymatic":[38],"extension":[39],"oligonucleotides":[41],"hybridized":[42],"selected":[44],"regions.":[46,107,138],"Facilitating":[47],"selection":[49,87],"most":[52],"appropriate":[53],"oligos":[55,89,142,157],"targeting":[57],"a":[58,78,112,188,195,221,233,247],"region":[59,102],"interest,":[61],"satisfying":[62],"properties":[64],"temperature":[66],"(Tm)":[67],"and":[68,86,103,129,135,206,227],"entropy":[69],"(\u0394G),":[70],"while":[71],"minimizing":[72],"formation":[74],"primer-dimers":[76],"in":[77,151,203,217],"pooled":[79],"experiment,":[80],"therefore":[82],"necessary.":[83],"Manual":[84],"design":[85,153,216],"becomes":[90],"very":[91],"challenging,":[92],"complicated":[93],"factors":[95],"such":[96],"as":[97,161,246],"length":[98],"target":[101,128],"Here":[108],"we":[109],"describe,":[110],"AnthOligo,":[111],"web-based":[113],"application":[114,191,250],"developed":[115],"optimally":[117],"automate":[118],"process":[120],"generation":[122,231],"oligo":[124],"sequences":[125],"used":[126,160],"continuum":[132],"large":[134],"complex":[136],"Apart":[139],"from":[140],"generating":[141],"RSE,":[144],"this":[145],"program":[146],"may":[147],"wider":[149],"applications":[150],"customizable":[155],"internal":[156],"be":[159],"baits":[162],"gene":[164],"panel":[165],"analysis":[166],"or":[167],"even":[168],"probes":[169],"large-scale":[171],"comparative":[172],"hybridization":[174],"array":[175],"processes.":[176],"AnthOligo":[177,218,242],"was":[178],"tested":[179],"capturing":[181],"Major":[183],"Histocompatibility":[184],"Complex":[185],"(MHC)":[186],"random":[189],"sample.The":[190],"provides":[192],"users":[193],"with":[194,229,251],"simple":[196],"interface":[197],"upload":[199],"an":[200,224,236],"input":[201,225],"file":[202,226],"BED":[204],"format":[205],"customize":[207],"parameters":[208],"each":[210],"task.":[211],"The":[212],"task":[213],"probe":[215],"commences":[219],"when":[220],"user":[222],"uploads":[223],"concludes":[228],"result-set":[234],"containing":[235],"optimal":[237],"set":[238],"oligos.":[241],"currently":[244],"available":[245,259],"public":[248],"web":[249],"URL:":[252],"http://antholigo.chop.edu.":[253],"SUPPLEMENTARY":[254],"INFORMATION:":[255],"Supplementary":[256],"data":[257],"are":[258],"at":[260],"Bioinformatics":[261],"online.":[262]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
