{"id":"https://openalex.org/W3030308483","doi":"https://doi.org/10.1093/bioinformatics/btaa547","title":"Audit logs to enforce document integrity in Skyline and Panorama","display_name":"Audit logs to enforce document integrity in Skyline and Panorama","publication_year":2020,"publication_date":"2020-05-25","ids":{"openalex":"https://openalex.org/W3030308483","doi":"https://doi.org/10.1093/bioinformatics/btaa547","mag":"3030308483","pmid":"https://pubmed.ncbi.nlm.nih.gov/32467974"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa547","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btaa547","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009253299","display_name":"Tobias Rohde","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tobias Rohde","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023285850","display_name":"Rita Chupalov","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rita Chupalov","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041963504","display_name":"Nicholas Shulman","orcid":"https://orcid.org/0000-0003-1674-0794"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Shulman","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101918119","display_name":"Vagisha Sharma","orcid":"https://orcid.org/0000-0003-1922-439X"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vagisha Sharma","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032682273","display_name":"Josh Eckels","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149662","display_name":"SurveyMonkey (United States)","ror":"https://ror.org/04p0q7p15","country_code":"US","type":"company","lineage":["https://openalex.org/I4210149662"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Josh Eckels","raw_affiliation_strings":["LabKey , San Diego, CA 92101, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LabKey , San Diego, CA 92101, USA","institution_ids":["https://openalex.org/I4210149662"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020721422","display_name":"Brian Pratt","orcid":"https://orcid.org/0000-0001-5880-6734"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian S Pratt","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043959168","display_name":"Michael J. MacCoss","orcid":"https://orcid.org/0000-0003-1853-0256"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael J MacCoss","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031754851","display_name":"Brendan MacLean","orcid":"https://orcid.org/0000-0002-9575-0255"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brendan X MacLean","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5031754851"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3219,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.51425446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"15","first_page":"4366","last_page":"4368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.4611999988555908,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.4611999988555908,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.17339999973773956,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.15950000286102295,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skyline","display_name":"Skyline","score":0.9506819248199463},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7982882857322693},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6104584336280823},{"id":"https://openalex.org/keywords/audit","display_name":"Audit","score":0.6093062162399292},{"id":"https://openalex.org/keywords/audit-trail","display_name":"Audit trail","score":0.6073514223098755},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5856946110725403},{"id":"https://openalex.org/keywords/panorama","display_name":"Panorama","score":0.5518098473548889},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5251181721687317},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.504254937171936},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2912404537200928},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27162042260169983},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13307839632034302},{"id":"https://openalex.org/keywords/accounting","display_name":"Accounting","score":0.08087959885597229}],"concepts":[{"id":"https://openalex.org/C2780757406","wikidata":"https://www.wikidata.org/wiki/Q465837","display_name":"Skyline","level":2,"score":0.9506819248199463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7982882857322693},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6104584336280823},{"id":"https://openalex.org/C199521495","wikidata":"https://www.wikidata.org/wiki/Q181487","display_name":"Audit","level":2,"score":0.6093062162399292},{"id":"https://openalex.org/C80958533","wikidata":"https://www.wikidata.org/wiki/Q1047174","display_name":"Audit trail","level":3,"score":0.6073514223098755},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5856946110725403},{"id":"https://openalex.org/C2780580889","wikidata":"https://www.wikidata.org/wiki/Q41363","display_name":"Panorama","level":2,"score":0.5518098473548889},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5251181721687317},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.504254937171936},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2912404537200928},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27162042260169983},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13307839632034302},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.08087959885597229},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa547","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32467974","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32467974","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7520049","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7520049","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa547","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1242620832","display_name":null,"funder_award_id":"R01 GM121696","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4123405890","display_name":null,"funder_award_id":"R01 GM103551","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W1995403127","https://openalex.org/W2141091417"],"related_works":["https://openalex.org/W1994126304","https://openalex.org/W2087306197","https://openalex.org/W1973297295","https://openalex.org/W2316530548","https://openalex.org/W2393825039","https://openalex.org/W2505069962","https://openalex.org/W3096764880","https://openalex.org/W2951694738","https://openalex.org/W3036977332","https://openalex.org/W2352220358"],"abstract_inverted_index":{"SUMMARY:":[0],"Skyline":[1,73,122,149,157],"is":[2,48,57,75,158],"a":[3,25,118,133],"Windows":[4],"application":[5],"for":[6,32,72,121],"targeted":[7],"mass":[8],"spectrometry":[9],"method":[10],"creation":[11],"and":[12,47,100,114,150],"quantitative":[13],"data":[14,166],"analysis.":[15],"Like":[16],"most":[17],"graphical":[18],"user":[19,27,44],"interface":[20,28],"(GUI)":[21],"tools,":[22],"it":[23],"has":[24],"complex":[26],"with":[29,132],"many":[30],"ways":[31],"users":[33],"to":[34,69,77,128,141],"edit":[35],"their":[36],"files":[37],"which":[38],"makes":[39,146],"the":[40,49,94,97],"task":[41],"of":[42,54,88],"logging":[43,53,71,84],"actions":[45],"challenging":[46],"reason":[50],"why":[51],"audit":[52,70,83,108,135],"every":[55],"change":[56],"not":[58],"common":[59],"in":[60,103,116],"GUI":[61,79,95],"tools.":[62,80],"We":[63],"present":[64],"an":[65,104],"object":[66],"comparison-based":[67],"approach":[68],"that":[74,124],"extensible":[76],"other":[78],"The":[81,107],"new":[82],"system":[85],"keeps":[86],"track":[87],"all":[89],"document":[90],"modifications":[91],"made":[92],"through":[93],"or":[96],"command":[98],"line":[99],"displays":[101],"them":[102],"interactive":[105],"grid.":[106],"log":[109,143],"can":[110,125],"also":[111],"be":[112,126],"uploaded":[113],"viewed":[115],"Panorama,":[117],"web":[119],"repository":[120],"documents":[123,131],"configured":[127],"only":[129],"accept":[130],"valid":[134],"log,":[136],"based":[137],"on":[138],"embedded":[139],"hashes":[140],"protect":[142],"integrity.":[144],"This":[145],"workflows":[147],"involving":[148],"Panorama":[151],"more":[152],"reproducible.":[153],"AVAILABILITY":[154],"AND":[155],"IMPLEMENTATION:":[156],"freely":[159],"available":[160,168],"at":[161,169],"https://skyline.ms.":[162],"SUPPLEMENTARY":[163],"INFORMATION:":[164],"Supplementary":[165],"are":[167],"Bioinformatics":[170],"online.":[171]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
