{"id":"https://openalex.org/W3028039738","doi":"https://doi.org/10.1093/bioinformatics/btaa536","title":"HECNet: a hierarchical approach to enzyme function classification using a Siamese Triplet Network","display_name":"HECNet: a hierarchical approach to enzyme function classification using a Siamese Triplet Network","publication_year":2020,"publication_date":"2020-05-18","ids":{"openalex":"https://openalex.org/W3028039738","doi":"https://doi.org/10.1093/bioinformatics/btaa536","mag":"3028039738","pmid":"https://pubmed.ncbi.nlm.nih.gov/32449765"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa536","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa536","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077800148","display_name":"Safyan Aman Memon","orcid":"https://orcid.org/0000-0001-9247-100X"},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Safyan Aman Memon","raw_affiliation_strings":["Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005592377","display_name":"Kinaan Aamir Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Kinaan Aamir Khan","raw_affiliation_strings":["Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074736458","display_name":"Hammad Naveed","orcid":"https://orcid.org/0000-0002-1867-974X"},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Hammad Naveed","raw_affiliation_strings":["Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Computational Biology Research Lab (CBRL),\u00a0Department of Computer Science, National University of Computer and Emerging Sciences , Islamabad 44000, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074736458"],"corresponding_institution_ids":["https://openalex.org/I201384688"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8227,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.85620978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"36","issue":"17","first_page":"4583","last_page":"4589"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.6925197243690491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6813493967056274},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.597937822341919},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5558628439903259},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3951095938682556},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3819507360458374},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38186949491500854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3434995710849762},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2272261083126068}],"concepts":[{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.6925197243690491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6813493967056274},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.597937822341919},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5558628439903259},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3951095938682556},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3819507360458374},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38186949491500854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3434995710849762},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2272261083126068},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa536","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa536","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32449765","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32449765","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","score":0.44999998807907104,"display_name":"Decent work and economic growth"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308571","display_name":"North Carolina Biotechnology Center","ror":"https://ror.org/03hj4jr80"},{"id":"https://openalex.org/F4320326275","display_name":"Higher Education Commision, Pakistan","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1973965874","https://openalex.org/W1977928166","https://openalex.org/W1996423252","https://openalex.org/W2003144438","https://openalex.org/W2026666393","https://openalex.org/W2037312364","https://openalex.org/W2048322438","https://openalex.org/W2064675550","https://openalex.org/W2083582778","https://openalex.org/W2094196435","https://openalex.org/W2117679109","https://openalex.org/W2119928987","https://openalex.org/W2133312664","https://openalex.org/W2135621733","https://openalex.org/W2157364932","https://openalex.org/W2170747616","https://openalex.org/W2342838938","https://openalex.org/W2766352633","https://openalex.org/W2892210937","https://openalex.org/W2898402099","https://openalex.org/W2903674301","https://openalex.org/W2906086412","https://openalex.org/W2908663744","https://openalex.org/W2938574745","https://openalex.org/W2944974555","https://openalex.org/W2963457143","https://openalex.org/W3022603721","https://openalex.org/W4213149192","https://openalex.org/W6631190155","https://openalex.org/W6683390034","https://openalex.org/W6757533638"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
