{"id":"https://openalex.org/W3027896077","doi":"https://doi.org/10.1093/bioinformatics/btaa523","title":"Identification of population-level differentially expressed genes in one-phenotype data","display_name":"Identification of population-level differentially expressed genes in one-phenotype data","publication_year":2020,"publication_date":"2020-05-14","ids":{"openalex":"https://openalex.org/W3027896077","doi":"https://doi.org/10.1093/bioinformatics/btaa523","mag":"3027896077","pmid":"https://pubmed.ncbi.nlm.nih.gov/32428201"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4283/33796600/btaa523.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4283/33796600/btaa523.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030762640","display_name":"Jiajing Xie","orcid":"https://orcid.org/0009-0004-0853-5859"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajing Xie","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104169345","display_name":"Yang Xu","orcid":"https://orcid.org/0009-0009-5974-047X"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Xu","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456781","display_name":"Haifeng Chen","orcid":"https://orcid.org/0000-0002-5455-9876"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210121071","display_name":"Fuzhou Second Hospital","ror":"https://ror.org/02t4nzq07","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121071"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haifeng Chen","raw_affiliation_strings":["Department of General Surgery, Fuzhou Second Hospital Affiliated to Xiamen University , Fuzhou 350007, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Surgery, Fuzhou Second Hospital Affiliated to Xiamen University , Fuzhou 350007, China","institution_ids":["https://openalex.org/I4210121071","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020350450","display_name":"Meirong Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meirong Chi","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100782183","display_name":"Jun He","orcid":"https://orcid.org/0000-0003-1510-1093"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun He","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101544371","display_name":"Meifeng Li","orcid":"https://orcid.org/0000-0003-3161-3611"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meifeng Li","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042883674","display_name":"Hui Liu","orcid":"https://orcid.org/0000-0002-5693-9397"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Liu","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075635144","display_name":"Jie Xia","orcid":"https://orcid.org/0000-0002-6586-0998"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Xia","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052760982","display_name":"Qingzhou Guan","orcid":"https://orcid.org/0000-0001-7741-6440"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingzhou Guan","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087055335","display_name":"Zheng Guo","orcid":"https://orcid.org/0000-0003-4466-6026"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zheng Guo","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066344285","display_name":"Haidan Yan","orcid":"https://orcid.org/0000-0003-0214-7471"},"institutions":[{"id":"https://openalex.org/I129708740","display_name":"Fujian Medical University","ror":"https://ror.org/050s6ns64","country_code":"CN","type":"education","lineage":["https://openalex.org/I129708740"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haidan Yan","raw_affiliation_strings":["Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Medical Bioinformatics, Fujian Province , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]},{"raw_affiliation_string":"Key Laboratory of Ministry of Education for Gastrointestinal Cancer, The School of Basic Medical Sciences, Fujian Medical University Department of Bioinformatics, , Fuzhou 350122, China","institution_ids":["https://openalex.org/I129708740"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066344285","https://openalex.org/A5087055335"],"corresponding_institution_ids":["https://openalex.org/I129708740"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4882,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.61466099,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"15","first_page":"4283","last_page":"4290"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8858000040054321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8858000040054321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.05220000073313713,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.010099999606609344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.7328101396560669},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5146897435188293},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.510592520236969},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5071001052856445},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4920026957988739},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4863458275794983},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4465920627117157},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4249938130378723},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3351562023162842},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31018078327178955},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28880763053894043},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06656897068023682}],"concepts":[{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.7328101396560669},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5146897435188293},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.510592520236969},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5071001052856445},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4920026957988739},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4863458275794983},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4465920627117157},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4249938130378723},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3351562023162842},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31018078327178955},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28880763053894043},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06656897068023682},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4283/33796600/btaa523.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32428201","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32428201","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7520039","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7520039","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa523","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/15/4283/33796600/btaa523.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6373321896","display_name":null,"funder_award_id":"JAT170214","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8771465975","display_name":null,"funder_award_id":"61801118","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1910607297","https://openalex.org/W1919344500","https://openalex.org/W1966116114","https://openalex.org/W1981849943","https://openalex.org/W1998767819","https://openalex.org/W2007615926","https://openalex.org/W2053800813","https://openalex.org/W2058004572","https://openalex.org/W2085547758","https://openalex.org/W2096192437","https://openalex.org/W2097554668","https://openalex.org/W2102278945","https://openalex.org/W2104005232","https://openalex.org/W2107665951","https://openalex.org/W2114104545","https://openalex.org/W2115003883","https://openalex.org/W2116343100","https://openalex.org/W2118258530","https://openalex.org/W2121906867","https://openalex.org/W2122982115","https://openalex.org/W2131271579","https://openalex.org/W2137526110","https://openalex.org/W2139345901","https://openalex.org/W2141458291","https://openalex.org/W2142295792","https://openalex.org/W2146512944","https://openalex.org/W2147013674","https://openalex.org/W2147109452","https://openalex.org/W2149496508","https://openalex.org/W2154431984","https://openalex.org/W2157795344","https://openalex.org/W2158705337","https://openalex.org/W2169353806","https://openalex.org/W2170989872","https://openalex.org/W2171528238","https://openalex.org/W2180050138","https://openalex.org/W2505710817","https://openalex.org/W2523024263","https://openalex.org/W2621171915","https://openalex.org/W2761275051","https://openalex.org/W2767280184","https://openalex.org/W2805771357","https://openalex.org/W2952212782","https://openalex.org/W2973690026","https://openalex.org/W4294107304","https://openalex.org/W6640138920","https://openalex.org/W6678086366"],"related_works":["https://openalex.org/W1840542775","https://openalex.org/W1986892844","https://openalex.org/W170658859","https://openalex.org/W2490137852","https://openalex.org/W4310366902","https://openalex.org/W3023720143","https://openalex.org/W3141198878","https://openalex.org/W2056932428","https://openalex.org/W2412120523","https://openalex.org/W1483316219"],"abstract_inverted_index":{"MOTIVATION:":[0],"For":[1],"some":[2],"specific":[3],"tissues,":[4],"such":[5,35],"as":[6,36,117],"the":[7,66,72,81,91,111,118,121,125,147,170],"heart":[8],"and":[9,42,96,105],"brain,":[10],"normal":[11],"controls":[12],"are":[13,178],"difficult":[14],"to":[15,51,61,136],"obtain.":[16],"Thus,":[17],"studies":[18],"with":[19,87],"only":[20,131],"a":[21],"particular":[22],"type":[23],"of":[24,39,75,94,146],"disease":[25],"samples":[26],"(one":[27],"phenotype)":[28],"cannot":[29,70],"be":[30,59],"analyzed":[31],"using":[32,110,130,142],"common":[33,115,140],"methods,":[34],"significance":[37],"analysis":[38],"microarrays,":[40],"edgeR":[41],"limma.":[43],"The":[44,164],"RankComp":[45,82],"algorithm,":[46,83],"which":[47],"was":[48],"mainly":[49],"developed":[50],"identify":[52,62,71],"individual-level":[53],"differentially":[54],"expressed":[55],"genes":[56],"(DEGs),":[57],"can":[58],"applied":[60],"population-level":[63],"DEGs":[64,95,112,126],"for":[65,155],"one-phenotype":[67,107,132],"data":[68,133,177],"but":[69],"dysregulation":[73,92],"directions":[74,93],"DEGs.":[76],"RESULTS:":[77],"Here,":[78],"we":[79],"optimized":[80],"termed":[84],"PhenoComp.":[85],"Compared":[86],"RankComp,":[88],"PhenoComp":[89,129,150,165],"provided":[90],"had":[97],"more":[98],"robust":[99],"detection":[100],"power":[101],"in":[102],"both":[103],"simulated":[104],"real":[106],"data.":[108,160],"Moreover,":[109],"detected":[113,127],"by":[114,128,139],"methods":[116,141],"'gold":[119],"standard',":[120],"results":[122],"showed":[123],"that":[124],"were":[134],"comparable":[135],"those":[137],"identified":[138],"case-control":[143],"samples,":[144],"independent":[145],"measurement":[148],"platform.":[149],"also":[151],"exhibited":[152],"good":[153],"performance":[154],"weakly":[156],"differential":[157],"expression":[158],"signal":[159],"AVAILABILITY":[161],"AND":[162],"IMPLEMENTATION:":[163],"algorithm":[166],"is":[167],"available":[168,179],"on":[169],"web":[171],"at":[172,180],"https://github.com/XJJ-student/PhenoComp.":[173],"SUPPLEMENTARY":[174],"INFORMATION:":[175],"Supplementary":[176],"Bioinformatics":[181],"online.":[182]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
