{"id":"https://openalex.org/W3026590953","doi":"https://doi.org/10.1093/bioinformatics/btaa518","title":"ThETA: transcriptome-driven efficacy estimates for gene-based TArget discovery","display_name":"ThETA: transcriptome-driven efficacy estimates for gene-based TArget discovery","publication_year":2020,"publication_date":"2020-05-16","ids":{"openalex":"https://openalex.org/W3026590953","doi":"https://doi.org/10.1093/bioinformatics/btaa518","mag":"3026590953","pmid":"https://pubmed.ncbi.nlm.nih.gov/32437556"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4214/34306869/btaa518.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4214/34306869/btaa518.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050926050","display_name":"Mario Failli","orcid":"https://orcid.org/0000-0002-3490-7714"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["FI","IT"],"is_corresponding":false,"raw_author_name":"Mario Failli","raw_affiliation_strings":["Department of Chemical , Materials and Industrial Engineering, University of Naples 'Federico II', Naples 80125, Italy","Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Chemical , Materials and Industrial Engineering, University of Naples 'Federico II', Naples 80125, Italy","institution_ids":["https://openalex.org/I71267560"]},{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047977221","display_name":"Jussi Paananen","orcid":"https://orcid.org/0000-0001-5100-4907"},"institutions":[{"id":"https://openalex.org/I4210117436","display_name":"Blueprint Genetics (Finland)","ror":"https://ror.org/02cqthz49","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210117436"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jussi Paananen","raw_affiliation_strings":["Blueprint Genetics Ltd , Finland","Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland"],"affiliations":[{"raw_affiliation_string":"Blueprint Genetics Ltd , Finland","institution_ids":["https://openalex.org/I4210117436"]},{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011752174","display_name":"Vittorio Fortino","orcid":"https://orcid.org/0000-0001-8693-5285"},"institutions":[{"id":"https://openalex.org/I4210117436","display_name":"Blueprint Genetics (Finland)","ror":"https://ror.org/02cqthz49","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210117436"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Vittorio Fortino","raw_affiliation_strings":["Blueprint Genetics Ltd , Finland","Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland"],"affiliations":[{"raw_affiliation_string":"Blueprint Genetics Ltd , Finland","institution_ids":["https://openalex.org/I4210117436"]},{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , Kuopio 70210, Finland","institution_ids":["https://openalex.org/I175532246"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011752174"],"corresponding_institution_ids":["https://openalex.org/I175532246","https://openalex.org/I4210117436"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2650,"currency":"EUR","value_usd":2858},"fwci":0.985,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.80883617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"14","first_page":"4214","last_page":"4216"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6239109039306641},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5874996185302734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5343538522720337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5324752330780029},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5217859745025635},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41764163970947266},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34123319387435913},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33554941415786743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32471513748168945},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1973617970943451}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6239109039306641},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5874996185302734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5343538522720337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5324752330780029},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5217859745025635},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41764163970947266},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34123319387435913},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33554941415786743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32471513748168945},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1973617970943451}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4214/34306869/btaa518.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32437556","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32437556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7390989","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7390989","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4214/34306869/btaa518.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3026590953.pdf","grobid_xml":"https://content.openalex.org/works/W3026590953.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1533942137","https://openalex.org/W1989277387","https://openalex.org/W2034537627","https://openalex.org/W2103017472","https://openalex.org/W2105776484","https://openalex.org/W2105924489","https://openalex.org/W2159482845","https://openalex.org/W2170146596","https://openalex.org/W2345356016","https://openalex.org/W2537679995","https://openalex.org/W2557530941","https://openalex.org/W2558366645","https://openalex.org/W2767891136","https://openalex.org/W2897805491","https://openalex.org/W2915806464","https://openalex.org/W2916047525","https://openalex.org/W2950595506","https://openalex.org/W2952849701","https://openalex.org/W2955011300","https://openalex.org/W2987928072","https://openalex.org/W3211402536","https://openalex.org/W4233698560","https://openalex.org/W4294216483","https://openalex.org/W6675966139","https://openalex.org/W6770414484","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W3150324899","https://openalex.org/W4392059188","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W2523545060"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
