{"id":"https://openalex.org/W3213785742","doi":"https://doi.org/10.1093/bioinformatics/btaa508","title":"2020 ISCB accomplishments by a Senior Scientist Award: Steven Salzberg","display_name":"2020 ISCB accomplishments by a Senior Scientist Award: Steven Salzberg","publication_year":2020,"publication_date":"2020-05-08","ids":{"openalex":"https://openalex.org/W3213785742","doi":"https://doi.org/10.1093/bioinformatics/btaa508","mag":"3213785742"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa508","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa508","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020554776","display_name":"Christiana N. Fogg","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137416","display_name":"Worthington City School District","ror":"https://ror.org/03p8px109","country_code":"US","type":"education","lineage":["https://openalex.org/I4210137416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christiana N Fogg","raw_affiliation_strings":["Kennsington , MD 20895, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kennsington , MD 20895, USA","institution_ids":["https://openalex.org/I4210137416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059155302","display_name":"Diane E. Kovats","orcid":"https://orcid.org/0000-0003-0896-1642"},"institutions":[{"id":"https://openalex.org/I4210109214","display_name":"International Society for Computational Biology","ror":"https://ror.org/01jv71z12","country_code":"US","type":"other","lineage":["https://openalex.org/I4210109214"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Diane E Kovats","raw_affiliation_strings":["International Society for Computational Biology , VA, 20176, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Society for Computational Biology , VA, 20176, USA","institution_ids":["https://openalex.org/I4210109214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038806020","display_name":"Ron Shamir","orcid":"https://orcid.org/0000-0003-1889-9870"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ron Shamir","raw_affiliation_strings":["Blavatnik School of Computer Science , Tel Aviv University, Tel Aviv 69978, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science , Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5059155302"],"corresponding_institution_ids":["https://openalex.org/I4210109214"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.34164451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"21","first_page":"3699","last_page":"3700"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11492","display_name":"Academic integrity and plagiarism","score":0.006800000090152025,"subfield":{"id":"https://openalex.org/subfields/3311","display_name":"Safety Research"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.006099999882280827,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4116230905056},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3701080083847046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.319113552570343}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4116230905056},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3701080083847046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.319113552570343}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/btaa508","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa508","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"The":[0,660,716],"Outstanding":[1],"Contributions":[2],"to":[3,35,194,247,299,334,378,428,463,472,477,482,516,543,571,597,599,624,691,725,734,791,813,847,867,1028,1224,1250],"IISCB":[4],"honors":[5],"a":[6,22,36,85,95,170,218,229,257,282,311,430,450,475,517,553,576,589,685,728,749,814,995,1031,1101,1134,1144,1155,1166,1222,1229,1259],"leader":[7],"in":[8,113,126,150,233,268,305,313,329,369,399,402,418,439,445,485,492,498,519,605,613,647,695,742,817,854,869,895,1048,1075],"the":[9,19,29,68,77,81,151,184,210,272,316,330,348,370,391,403,414,423,453,486,520,668,681,701,704,743,746,755,784,787,793,796,808,811,825,835,848,859,875,887,890,896,921,924,938,965,975,1023,1026,1088,1091,1137,1147,1151,1158,1169,1175,1197,1252],"fields":[10],"of":[11,54,67,80,186,212,261,285,319,336,344,372,420,432,670,748,795,810,839,841,850,862,879,889,899,923,928,940,950,1035,1077,1090,1100,1105,1113,1136,1140,1146,1153,1157,1168,1171,1174,1178,1183,1208,1212,1215,1255],"computational":[12,1070,1289],"biology":[13,382,447,1290],"and":[14,45,59,65,93,119,128,140,157,196,205,243,250,280,301,323,339,363,425,458,467,513,531,619,646,651,674,698,715,722,773,777,799,837,884,886,917,932,946,948,964,1015,1022,1042,1050,1053,1096,1108,1142,1165,1194,1211,1227,1236,1239,1244,1275],"bioinformatics":[15,1185],"each":[16],"year":[17,219],"with":[18,642,676,759,830,985,1011,1062,1081,1242],"Accomplishments":[20,83,1257],"by":[21,33,84,138,201,226,452,523,712,783,1258,1278,1287],"Senior":[23,86,1260],"Scientist":[24,87,1261],"Award.":[25,88],"This":[26,558,719],"award":[27,1280],"is":[28,39,73,183,873,982,1073,1220,1247,1276,1283],"highest":[30],"honor":[31],"conferred":[32],"ISCB":[34,82],"scientist":[37],"who":[38,355,579,602],"recognized":[40,92,1129],"for":[41,70,555,592,632,662,770,892,913,990,998,1150,1161,1202,1205],"significant":[42],"research,":[43],"education,":[44],"service":[46],"contributions.":[47],"Steven":[48,109],"L.":[49],"Salzberg,":[50],"Bloomberg":[51,876],"Distinguished":[52,877],"Professor":[53,861,878],"Biomedical":[55,880],"Engineering,":[56,881],"Computer":[57,167,373,863,882],"Science":[58,168,883,1204],"Biostatistics":[60,885],"at":[61,98,147,228,347,360,422,503,655,672,1051,1180,1267,1269],"Johns":[62,504],"Hopkins":[63,505],"University":[64,149,362,849],"Director":[66,669,888],"Center":[69,891],"Computational":[71,893,1162],"Biology,":[72],"being":[74,103,710],"honored":[75,1249],"as":[76,169,384,495,552,994,1133,1190],"2020":[78,100,1253],"winner":[79],"He":[89,180,308,406,469,507,595,738,865,1263],"will":[90],"be":[91,429,550,630,732,1251],"give":[94],"keynote":[96],"address":[97],"ISMB":[99,1270],"virtual":[101],"conference":[102],"held":[104,356],"on":[105,162,239,277,446,460,535,987,1006,1016,1030,1057],"July":[106],"13\u201316,":[107],"2020.":[108],"Salzberg":[110,134,216,253,297,375,536,567,585,618,652,666,721,776,823,844,981,1037,1072,1219,1246],"grew":[111],"up":[112],"Columbia,":[114],"SC.":[115],"Throughout":[116],"his":[117,213,303,436,461,479,499,677,723,760,778,1046,1131,1206,1288],"childhood":[118],"young":[120],"adulthood,":[121],"he":[122,153,159,197,237,388,397,442,496,538,857,872,1054,1195],"was":[123,135,198,256,265,350,398,470,508,568,607,611,858],"always":[124,1265],"interested":[125,267,604,612],"science":[127,132,421],"deeply":[129],"enjoyed":[130],"reading":[131,459],"fiction.":[133],"also":[136,569,639,739,764,983,1221],"fascinated":[137],"astronomy":[139],"considered":[141],"studying":[142],"physics.":[143],"As":[144,901],"an":[145,175,240,357,385,941,951],"undergraduate":[146,214],"Yale":[148,300],"1970\u2019s,":[152],"explored":[154],"several":[155],"majors":[156],"thought":[158,189],"had":[160,376,588,638],"settled":[161],"English":[163],"Literature":[164],"but":[165,263,387],"added":[166],"second":[171],"major":[172],"upon":[173,782,1285],"taking":[174,380],"introductory":[176],"computer":[177,306,593,600,627],"programming":[178,224],"class.":[179],"recalled,":[181,586],"\u2018This":[182],"kind":[185],"math":[187],"I":[188,190,264,270,274,287,295,426,610],"would":[191,288,292],"really":[192],"like":[193,413,634],"study\u2019,":[195],"soon":[199],"captivated":[200],"artificial":[202],"intelligence":[203],"(AI)":[204],"natural":[206],"language":[207],"processing.":[208],"At":[209],"advice":[211],"advisor,":[215],"spent":[217],"after":[220,786],"graduation":[221],"gaining":[222],"more":[223,615,1116],"experience":[225],"working":[227,622,654,984],"local":[230],"power":[231,338],"company":[232],"South":[234],"Carolina,":[235],"where":[236,856,871],"worked":[238],"IBM":[241,251],"mainframe":[242],"used":[244,551,689,733],"self-training":[245],"courses":[246],"learn":[248,464],"COBOL":[249],"assembler.":[252],"said,":[254,407],"\u2018It":[255],"very":[258],"boring":[259],"sort":[260],"application,":[262],"still":[266,509,688],"programming.":[269,594],"liked":[271],"idea":[273],"could":[275,539,549,629,731,753],"work":[276,801,1029,1114],"something":[278],"technical":[279,341,957],"within":[281],"short":[283],"period":[284],"time,":[286,424,566],"have":[289,959,1002,1127,1187],"results":[290],"that":[291,537,730,752,800,805,1064,1083,1233],"do":[293],"what":[294],"intended\u2019.":[296],"returned":[298,866],"completed":[302],"M.S.":[304],"science.":[307],"then":[309,845],"joined":[310],"startup":[312,349],"Boston":[314],"during":[315],"first":[317,500,705],"blush":[318],"AI,":[320],"although":[321],"this":[322,565,961,1279],"many":[324,1069,1121],"other":[325,340,766,971],"AI":[326,351],"startups":[327],"failed":[328],"late":[331,404,454],"1980\u2019s":[332],"due":[333],"lack":[335],"computing":[337,480],"limitations.":[342],"One":[343],"Salzberg\u2019s":[345,366,560,906,934,1111,1184],"advisors":[346],"pioneer":[352],"Bill":[353],"Woods,":[354],"adjunct":[358],"appointment":[359],"Harvard":[361],"later":[364],"became":[365,559,667],"graduate":[367,400],"advisor":[368],"Department":[371],"Science.":[374,864],"managed":[377],"avoid":[379],"any":[381,1099],"classes":[383],"undergraduate,":[386],"heard":[389],"about":[390,465,511,526,616],"Human":[392,409],"Genome":[393,410,827],"Project":[394,411],"(HGP)":[395],"while":[396],"school":[401],"1980\u2019s.":[405],"\u2018The":[408],"sounded":[412],"most":[415],"exciting":[416],"thing":[417],"all":[419],"wanted":[427,596],"part":[431],"that\u2019.":[433],"While":[434],"completing":[435],"PhD":[437],"project":[438,829],"machine":[440,493,541],"learning,":[441],"started":[443,497,640],"sitting":[444],"classes,":[448],"including":[449,920,1120],"course":[451],"Stephen":[455],"Jay":[456],"Gould":[457],"own":[462],"genomics":[466,512],"genetics.":[468],"determined":[471],"figure":[473],"out":[474],"way":[476],"using":[478,991],"knowledge":[481],"get":[483,1065],"involved":[484,741,834],"HGP.":[487],"Salzburg":[488],"continued":[489],"doing":[490],"research":[491,658,907,966],"learning":[494,542,614],"academic":[501],"position":[502],"University.":[506],"curious":[510],"recalled":[514],"going":[515],"talk":[518,598],"early":[521,702],"1990\u2019s":[522],"Temple":[524],"Smith":[525,620,637,650],"sequence":[527,918,1217],"differences":[528],"between":[529],"exons":[530,545],"introns.":[532],"It":[533],"dawned":[534],"use":[540],"distinguish":[544],"from":[546,1009,1019],"introns,":[547],"which":[548,833],"strategy":[554],"gene":[556,635,683,750,768,944],"finding.":[557,636],"entrance":[561],"into":[562],"genomics.":[563],"During":[564],"introduced":[570],"Nobel":[572],"Laureate":[573],"Hamilton":[574],"Smith,":[575],"notable":[577],"microbiologist":[578],"discovered":[580],"type":[581],"II":[582],"restriction":[583],"enzymes.":[584],"\u2018[Smith]":[587],"secret":[590],"passion":[591],"scientists":[601],"were":[603,709,780],"genomics\u2014that":[606],"me.":[608],"And":[609],"genomics\u2019.":[617],"began":[621,653],"together":[623],"understand":[625],"how":[626],"programs":[628,929],"made":[631,960],"tasks":[633],"collaborating":[641],"J.":[643],"Craig":[644],"Venter,":[645],"1997,":[648],"both":[649,713],"Venter\u2019s":[656],"non-profit":[657],"institute,":[659],"Institute":[661],"Genomic":[663],"Research":[664],"(TIGR).":[665],"Bioinformatics":[671],"TIGR":[673,714],"developed":[675],"colleague":[678,761],"Art":[679],"Delcher":[680],"GLIMMER":[682],"finder,":[684],"software":[686,1193,1210],"system":[687,729],"today":[690],"identify":[692],"coding":[693],"regions":[694],"bacteria,":[696,798],"archea":[697],"viruses.":[699],"In":[700,821],"2000\u2019s,":[703],"Mycobacterium":[706],"tuberculosis":[707],"genomes":[708,973],"sequenced":[711],"Sanger":[717],"Center.":[718],"led":[720],"colleagues":[724,779,986],"develop":[726],"MUMmer,":[727],"compare":[735],"large":[736],"genomes.":[737,775,1110],"got":[740],"HGP":[744],"through":[745,1130],"development":[747,922,939],"finder":[751],"analyze":[754,792],"human":[756,943,953,1092,1094],"genome":[757,794,915,1216],"and,":[758],"Mihaela":[762],"Pertea,":[763],"built":[765],"eukaryotic":[767],"finders":[769],"plant,":[771],"fungus":[772],"parasite":[774],"called":[781],"FBI":[785],"2001":[788],"anthrax":[789,797],"attacks":[790],"identified":[802],"genetic":[803],"mutations":[804],"eventually":[806],"pinpointed":[807],"source":[809],"bacteria":[812],"biodefense":[815],"lab":[816],"Fort":[818],"Detrick,":[819],"Maryland.":[820],"2003,":[822],"co-founded":[824],"Influenza":[826],"Sequencing":[828],"David":[831],"Lipman,":[832],"sequencing":[836,903,993],"analysis":[838],"thousands":[840],"influenza":[842],"isolates.":[843],"moved":[846],"Maryland,":[851],"College":[852],"Park":[853],"2005,":[855],"Horvitz":[860],"JHU":[868],"2011,":[870],"currently":[874],"Biology":[894,1163],"Whiting":[897],"School":[898],"Engineering.":[900],"next-generation":[902],"technology":[904,1024],"developed,":[905],"interests":[908,936],"shifted":[909],"toward":[910],"developing":[911,988],"algorithms":[912],"large-scale":[914],"assembly":[916,947],"alignment,":[919],"open-source":[925,1192,1209],"Tuxedo":[926],"suite":[927],"(Bowtie,":[930],"Tophat":[931],"Cufflinks).":[933],"current":[935],"include":[937],"improved":[942],"catalog":[945],"annotation":[949],"Ashkenazi":[952],"reference":[954,972],"genome.":[955],"Recent":[956],"advances":[958],"undertaking":[962],"feasible,":[963],"community":[967],"has":[968,1025,1038,1055,1264],"desperately":[969],"needed":[970],"beyond":[974],"only":[976],"publicly":[977],"available":[978],"genome,":[979,1093],"GRCh38.":[980],"methods":[989],"shotgun":[992],"diagnostic":[996],"tool":[997],"infectious":[999],"diseases.":[1000],"They":[1001],"tested":[1003],"their":[1004,1273],"techniques":[1005],"biopsy":[1007],"materials":[1008],"patients":[1010],"difficult-to-diagnose":[1012],"brain":[1013],"infections":[1014],"samples":[1017],"collected":[1018],"eye":[1020],"infections,":[1021],"potential":[1027],"much":[1032,1102],"broad":[1033],"range":[1034,1104],"infections.":[1036],"trained":[1039],"numerous":[1040],"students":[1041],"post-doctoral":[1043],"fellows":[1044],"throughout":[1045],"time":[1047],"academia":[1049],"TIGR,":[1052],"focused":[1056],"matching":[1058],"highly":[1059,1122],"motivated":[1060],"individuals":[1061],"projects":[1063],"them":[1066],"excited.":[1067],"Like":[1068],"biologists,":[1071],"continually":[1074],"search":[1076],"interesting":[1078],"data":[1079],"associated":[1080],"problems":[1082],"matter,":[1084],"whether":[1085],"they":[1086],"involve":[1087],"nature":[1089],"health":[1095],"disease,":[1097],"or":[1098],"broader":[1103],"microbial,":[1106],"plant":[1107],"animal":[1109],"body":[1112],"includes":[1115],"than":[1117],"300":[1118],"publications,":[1119],"cited":[1123],"manuscripts.":[1124],"His":[1125],"contributions":[1126],"been":[1128,1188],"election":[1132],"member":[1135,1167],"American":[1138,1148],"Academy":[1139],"Arts":[1141],"Sciences,":[1143],"Fellow":[1145,1156],"Association":[1149],"Advancement":[1152],"Science,":[1154],"International":[1159],"Society":[1160],"(ISCB)":[1164],"Board":[1170],"Scientific":[1172],"Counselors":[1173],"National":[1176],"Library":[1177],"Medicine":[1179],"NIH.":[1181],"All":[1182],"systems":[1186],"released":[1189],"free,":[1191],"won":[1196],"2013":[1198],"Benjamin":[1199],"Franklin":[1200],"Award":[1201],"Open":[1203],"advocacy":[1207],"open":[1213],"sharing":[1214],"data.":[1218],"contributor":[1223],"Forbes":[1225],"magazine":[1226],"writes":[1228],"widely":[1230],"read":[1231],"column":[1232],"debunks":[1234],"pseudoscience":[1235],"explains":[1237],"scientific":[1238],"medical":[1240],"findings":[1241],"honesty":[1243],"clarity.":[1245],"greatly":[1248],"recipient":[1254],"ISCB\u2019s":[1256],"award.":[1262],"felt":[1266],"home":[1268],"meetings":[1271],"since":[1272,1281],"inception":[1274],"touched":[1277],"it":[1282],"bestowed":[1284],"him":[1286],"colleagues.":[1291]},"counts_by_year":[],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
