{"id":"https://openalex.org/W3027089056","doi":"https://doi.org/10.1093/bioinformatics/btaa490","title":"<scp>Metaviral</scp> <scp>SPAdes</scp>: assembly of viruses from metagenomic data","display_name":"<scp>Metaviral</scp> <scp>SPAdes</scp>: assembly of viruses from metagenomic data","publication_year":2020,"publication_date":"2020-05-08","ids":{"openalex":"https://openalex.org/W3027089056","doi":"https://doi.org/10.1093/bioinformatics/btaa490","mag":"3027089056","pmid":"https://pubmed.ncbi.nlm.nih.gov/32413137"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa490","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4126/34306787/btaa490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4126/34306787/btaa490.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024412068","display_name":"Dmitry Antipov","orcid":"https://orcid.org/0000-0002-6087-0660"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Dmitry Antipov","raw_affiliation_strings":["Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia"],"affiliations":[{"raw_affiliation_string":"Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111116704","display_name":"Mikhail Raiko","orcid":null},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail Raiko","raw_affiliation_strings":["Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia"],"affiliations":[{"raw_affiliation_string":"Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025927694","display_name":"Alla Lapidus","orcid":"https://orcid.org/0000-0003-0427-8731"},"institutions":[{"id":"https://openalex.org/I172901346","display_name":"St Petersburg University","ror":"https://ror.org/023znxa73","country_code":"RU","type":"education","lineage":["https://openalex.org/I172901346"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alla Lapidus","raw_affiliation_strings":["Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia"],"affiliations":[{"raw_affiliation_string":"Institute for Translational Biomedicine, St. Petersburg State University Institute of Translational Biomedicine, Center of Algorithmic Biotechnology, , St. Petersburg 199004, Russia","institution_ids":["https://openalex.org/I172901346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel A Pevzner","raw_affiliation_strings":["University of California Department of Computer Science and Engineering, , San Diego, CA 92093-0404, USA"],"affiliations":[{"raw_affiliation_string":"University of California Department of Computer Science and Engineering, , San Diego, CA 92093-0404, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024412068"],"corresponding_institution_ids":["https://openalex.org/I172901346"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":23.6347,"has_fulltext":false,"cited_by_count":316,"citation_normalized_percentile":{"value":0.99786606,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"14","first_page":"4126","last_page":"4129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9298336505889893},{"id":"https://openalex.org/keywords/human-virome","display_name":"Human virome","score":0.708661675453186},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6139962673187256},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.604475736618042},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5965933203697205},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5279597043991089},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.515801191329956},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4593534469604492},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42797398567199707},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.424141526222229},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18733888864517212},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17350637912750244},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09234648942947388}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9298336505889893},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.708661675453186},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6139962673187256},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.604475736618042},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5965933203697205},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5279597043991089},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.515801191329956},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4593534469604492},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42797398567199707},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.424141526222229},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18733888864517212},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17350637912750244},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09234648942947388},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa490","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4126/34306787/btaa490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32413137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32413137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa490","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/14/4126/34306787/btaa490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2948735469","display_name":null,"funder_award_id":"51555639","funder_id":"https://openalex.org/F4320322515","funder_display_name":"Saint Petersburg State University"},{"id":"https://openalex.org/G5008053224","display_name":null,"funder_award_id":"19-14-00172","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320322515","display_name":"Saint Petersburg State University","ror":"https://ror.org/023znxa73"},{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3027089056.pdf","grobid_xml":"https://content.openalex.org/works/W3027089056.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1480376833","https://openalex.org/W1632730578","https://openalex.org/W1966912927","https://openalex.org/W1986577703","https://openalex.org/W2055043387","https://openalex.org/W2119859604","https://openalex.org/W2143485490","https://openalex.org/W2173732482","https://openalex.org/W2514983714","https://openalex.org/W2521169042","https://openalex.org/W2599417231","https://openalex.org/W2732139758","https://openalex.org/W2732496903","https://openalex.org/W2767759966","https://openalex.org/W2789843538","https://openalex.org/W2791687925","https://openalex.org/W2898402099","https://openalex.org/W2935685975","https://openalex.org/W2942757983","https://openalex.org/W2945100670","https://openalex.org/W2951325968","https://openalex.org/W2951563276","https://openalex.org/W2952204926","https://openalex.org/W2999493833","https://openalex.org/W6703940240","https://openalex.org/W6762644590","https://openalex.org/W6772593604"],"related_works":["https://openalex.org/W2519363532","https://openalex.org/W3182597671","https://openalex.org/W4220807255","https://openalex.org/W4391986707","https://openalex.org/W4313305812","https://openalex.org/W3216950677","https://openalex.org/W4293040420","https://openalex.org/W2254157384","https://openalex.org/W2289294330","https://openalex.org/W3133222449"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":68},{"year":2024,"cited_by_count":80},{"year":2023,"cited_by_count":56},{"year":2022,"cited_by_count":37},{"year":2021,"cited_by_count":45},{"year":2020,"cited_by_count":9}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2020-05-29T00:00:00"}