{"id":"https://openalex.org/W3042452836","doi":"https://doi.org/10.1093/bioinformatics/btaa479","title":"MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model","display_name":"MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model","publication_year":2020,"publication_date":"2020-05-05","ids":{"openalex":"https://openalex.org/W3042452836","doi":"https://doi.org/10.1093/bioinformatics/btaa479","mag":"3042452836","pmid":"https://pubmed.ncbi.nlm.nih.gov/32657386"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa479","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa479","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i399/33557867/btaa479.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i399/33557867/btaa479.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101997018","display_name":"G. S. Venkatesh","orcid":"https://orcid.org/0000-0002-1905-4274"},"institutions":[{"id":"https://openalex.org/I181514455","display_name":"International Institute of Information Technology Bangalore","ror":"https://ror.org/05h9eqy10","country_code":"IN","type":"education","lineage":["https://openalex.org/I181514455"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Gopalakrishnan Venkatesh","raw_affiliation_strings":["International Institute of Information Technology Bangalore , Bangalore 560100, India"],"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology Bangalore , Bangalore 560100, India","institution_ids":["https://openalex.org/I181514455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041322538","display_name":"Aayush Grover","orcid":"https://orcid.org/0000-0002-3716-2850"},"institutions":[{"id":"https://openalex.org/I181514455","display_name":"International Institute of Information Technology Bangalore","ror":"https://ror.org/05h9eqy10","country_code":"IN","type":"education","lineage":["https://openalex.org/I181514455"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Aayush Grover","raw_affiliation_strings":["International Institute of Information Technology Bangalore , Bangalore 560100, India"],"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology Bangalore , Bangalore 560100, India","institution_ids":["https://openalex.org/I181514455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046309314","display_name":"G. Srinivasaraghavan","orcid":"https://orcid.org/0000-0002-8325-4393"},"institutions":[{"id":"https://openalex.org/I181514455","display_name":"International Institute of Information Technology Bangalore","ror":"https://ror.org/05h9eqy10","country_code":"IN","type":"education","lineage":["https://openalex.org/I181514455"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"G Srinivasaraghavan","raw_affiliation_strings":["International Institute of Information Technology Bangalore , Bangalore 560100, India"],"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology Bangalore , Bangalore 560100, India","institution_ids":["https://openalex.org/I181514455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055571512","display_name":"Shrisha Rao","orcid":"https://orcid.org/0000-0003-0625-5103"},"institutions":[{"id":"https://openalex.org/I181514455","display_name":"International Institute of Information Technology Bangalore","ror":"https://ror.org/05h9eqy10","country_code":"IN","type":"education","lineage":["https://openalex.org/I181514455"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shrisha Rao","raw_affiliation_strings":["International Institute of Information Technology Bangalore , Bangalore 560100, India"],"affiliations":[{"raw_affiliation_string":"International Institute of Information Technology Bangalore , Bangalore 560100, India","institution_ids":["https://openalex.org/I181514455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041322538","https://openalex.org/A5101997018"],"corresponding_institution_ids":["https://openalex.org/I181514455"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5078,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.90224095,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"36","issue":"Supplement_1","first_page":"i399","last_page":"i406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.823213517665863},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.7011072635650635},{"id":"https://openalex.org/keywords/mhc-class-i","display_name":"MHC class I","score":0.6234592199325562},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.5952802896499634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48321306705474854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45308107137680054},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44512104988098145},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.43462252616882324},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.33677566051483154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32829174399375916},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30142492055892944},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11810389161109924}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.823213517665863},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.7011072635650635},{"id":"https://openalex.org/C170627219","wikidata":"https://www.wikidata.org/wiki/Q13218497","display_name":"MHC class I","level":4,"score":0.6234592199325562},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5952802896499634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48321306705474854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45308107137680054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44512104988098145},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.43462252616882324},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.33677566051483154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32829174399375916},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30142492055892944},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11810389161109924}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa479","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa479","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i399/33557867/btaa479.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32657386","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32657386","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7355292","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7355292","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa479","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa479","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i399/33557867/btaa479.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.800000011920929,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3042452836.pdf","grobid_xml":"https://content.openalex.org/works/W3042452836.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W207309682","https://openalex.org/W379619344","https://openalex.org/W577825744","https://openalex.org/W1501531009","https://openalex.org/W1966716734","https://openalex.org/W1967358836","https://openalex.org/W2011013090","https://openalex.org/W2030652623","https://openalex.org/W2043161969","https://openalex.org/W2053707749","https://openalex.org/W2059378562","https://openalex.org/W2100350770","https://openalex.org/W2120399005","https://openalex.org/W2125732073","https://openalex.org/W2131774270","https://openalex.org/W2158698691","https://openalex.org/W2158899491","https://openalex.org/W2160583217","https://openalex.org/W2168688111","https://openalex.org/W2169716006","https://openalex.org/W2271914738","https://openalex.org/W2326870000","https://openalex.org/W2557283755","https://openalex.org/W2612690371","https://openalex.org/W2724264513","https://openalex.org/W2728365508","https://openalex.org/W2743893844","https://openalex.org/W2770877241","https://openalex.org/W2774113098","https://openalex.org/W2783102765","https://openalex.org/W2891436740","https://openalex.org/W2900127803","https://openalex.org/W2900992438","https://openalex.org/W2947980028","https://openalex.org/W2948058491","https://openalex.org/W2949949116","https://openalex.org/W2952230511","https://openalex.org/W2953065444","https://openalex.org/W2959124424","https://openalex.org/W3145506661","https://openalex.org/W6653346449","https://openalex.org/W6683738474"],"related_works":["https://openalex.org/W1840653008","https://openalex.org/W2977793531","https://openalex.org/W2023967363","https://openalex.org/W1939527068","https://openalex.org/W2070684866","https://openalex.org/W2126139339","https://openalex.org/W2168688111","https://openalex.org/W4281625971","https://openalex.org/W2094567316","https://openalex.org/W4200537437"],"abstract_inverted_index":{"The":[0],"data":[1],"and":[2],"source":[3],"code":[4],"are":[5],"available":[6],"at":[7],"https://github.com/gopuvenkat/MHCAttnNet.":[8]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
