{"id":"https://openalex.org/W3042928139","doi":"https://doi.org/10.1093/bioinformatics/btaa463","title":"TinGa: fast and flexible trajectory inference with Growing Neural Gas","display_name":"TinGa: fast and flexible trajectory inference with Growing Neural Gas","publication_year":2020,"publication_date":"2020-07-01","ids":{"openalex":"https://openalex.org/W3042928139","doi":"https://doi.org/10.1093/bioinformatics/btaa463","mag":"3042928139","pmid":"https://pubmed.ncbi.nlm.nih.gov/32657409"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa463","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i66/33489119/btaa463.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i66/33489119/btaa463.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004591041","display_name":"Helena Todorov","orcid":"https://orcid.org/0000-0002-1594-8609"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]}],"countries":["BE","FR"],"is_corresponding":true,"raw_author_name":"Helena Todorov","raw_affiliation_strings":["Centre International de recherche en Infectiologie, Universit\u00e9 de Lyon, INSERM U1111, CNRS UMR 5308, Ecole Normale Sup\u00e9rieure de Lyon, Universit\u00e9 Claude Bernard Lyon 1 , 69007 Lyon, France","Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Centre International de recherche en Infectiologie, Universit\u00e9 de Lyon, INSERM U1111, CNRS UMR 5308, Ecole Normale Sup\u00e9rieure de Lyon, Universit\u00e9 Claude Bernard Lyon 1 , 69007 Lyon, France","institution_ids":["https://openalex.org/I4210161906","https://openalex.org/I100532134","https://openalex.org/I154526488","https://openalex.org/I1294671590","https://openalex.org/I113428412"]},{"raw_affiliation_string":"Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008243505","display_name":"Robrecht Cannoodt","orcid":"https://orcid.org/0000-0003-3641-729X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Robrecht Cannoodt","raw_affiliation_strings":["Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031014178","display_name":"Wouter Saelens","orcid":"https://orcid.org/0000-0002-7114-6248"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wouter Saelens","raw_affiliation_strings":["Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001585713","display_name":"Yvan Saeys","orcid":"https://orcid.org/0000-0002-0415-1506"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210139803","display_name":"VIB-UGent Center for Inflammation Research","ror":"https://ror.org/04q4ydz28","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210139803"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Yvan Saeys","raw_affiliation_strings":["Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium"],"affiliations":[{"raw_affiliation_string":"Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research , Ghent 9052, Belgium","institution_ids":["https://openalex.org/I4210139803"]},{"raw_affiliation_string":"Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent 9000, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001585713","https://openalex.org/A5004591041"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I32597200","https://openalex.org/I4210139803","https://openalex.org/I4210161906"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7399,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.84964163,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"36","issue":"Supplement_1","first_page":"i66","last_page":"i74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.7836006283760071},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7771502137184143},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6823242902755737},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6626540422439575},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6554206609725952},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.5811097025871277},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40055379271507263},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36558961868286133},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35403603315353394},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35132694244384766},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34125763177871704},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15798941254615784}],"concepts":[{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.7836006283760071},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7771502137184143},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6823242902755737},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6626540422439575},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6554206609725952},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.5811097025871277},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40055379271507263},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36558961868286133},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35403603315353394},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35132694244384766},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34125763177871704},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15798941254615784},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067397","descriptor_name":"Nerve Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067397","descriptor_name":"Nerve Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067397","descriptor_name":"Nerve Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa463","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i66/33489119/btaa463.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32657409","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32657409","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:8683280","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/8683280","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1460-2059","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:7355244","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7355244","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa463","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i66/33489119/btaa463.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3042928139.pdf","grobid_xml":"https://content.openalex.org/works/W3042928139.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1874466506","https://openalex.org/W1984883254","https://openalex.org/W1993287310","https://openalex.org/W2138754805","https://openalex.org/W2344887288","https://openalex.org/W2373831850","https://openalex.org/W2407916594","https://openalex.org/W2472063172","https://openalex.org/W2509957998","https://openalex.org/W2516455020","https://openalex.org/W2526724898","https://openalex.org/W2540833380","https://openalex.org/W2781909607","https://openalex.org/W2912321349","https://openalex.org/W2916020270","https://openalex.org/W2927507212","https://openalex.org/W2949067670","https://openalex.org/W2950372712","https://openalex.org/W2951084686","https://openalex.org/W2951415832","https://openalex.org/W2951799803","https://openalex.org/W2978495430","https://openalex.org/W2989807288","https://openalex.org/W6680294583","https://openalex.org/W6714231441"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W4384345686","https://openalex.org/W2357937784","https://openalex.org/W2547618384","https://openalex.org/W4394391052","https://openalex.org/W2145834781","https://openalex.org/W2577782152","https://openalex.org/W262455470","https://openalex.org/W4242899858","https://openalex.org/W2356327704"],"abstract_inverted_index":{"R":[0],"scripts":[1],"for":[2],"running":[3],"TinGa,":[4],"comparing":[5],"it":[6],"to":[7],"top":[8],"existing":[9],"methods":[10],"and":[11],"generating":[12],"the":[13],"figures":[14],"of":[15],"this":[16],"article":[17],"are":[18],"available":[19],"at":[20],"https://github.com/Helena-todd/TinGa.":[21]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
