{"id":"https://openalex.org/W3043250694","doi":"https://doi.org/10.1093/bioinformatics/btaa450","title":"A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification","display_name":"A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification","publication_year":2020,"publication_date":"2020-06-23","ids":{"openalex":"https://openalex.org/W3043250694","doi":"https://doi.org/10.1093/bioinformatics/btaa450","mag":"3043250694","pmid":"https://pubmed.ncbi.nlm.nih.gov/32657394"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa450","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa450","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i292/33489078/btaa450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i292/33489078/btaa450.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085346602","display_name":"Avi Srivastava","orcid":"https://orcid.org/0000-0001-9798-2079"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Avi Srivastava","raw_affiliation_strings":["Stony Brook University Department of Computer Science, , Stony Brook 11794, NY, USA"],"affiliations":[{"raw_affiliation_string":"Stony Brook University Department of Computer Science, , Stony Brook 11794, NY, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037687088","display_name":"Laraib Malik","orcid":"https://orcid.org/0000-0001-8094-0657"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laraib Malik","raw_affiliation_strings":["Stony Brook University Department of Computer Science, , Stony Brook 11794, NY, USA"],"affiliations":[{"raw_affiliation_string":"Stony Brook University Department of Computer Science, , Stony Brook 11794, NY, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040245011","display_name":"Hirak Sarkar","orcid":"https://orcid.org/0000-0003-3636-7384"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hirak Sarkar","raw_affiliation_strings":["University of Maryland Computer Science Department, , College Park 20742, MD, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland Computer Science Department, , College Park 20742, MD, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014584023","display_name":"Rob Patro","orcid":"https://orcid.org/0000-0001-8463-1675"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rob Patro","raw_affiliation_strings":["University of Maryland Computer Science Department, , College Park 20742, MD, USA"],"affiliations":[{"raw_affiliation_string":"University of Maryland Computer Science Department, , College Park 20742, MD, USA","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014584023","https://openalex.org/A5085346602"],"corresponding_institution_ids":["https://openalex.org/I59553526","https://openalex.org/I66946132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9194,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.73229233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"36","issue":"Supplement_1","first_page":"i292","last_page":"i299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9549999833106995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7600637674331665},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6063432097434998},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5302644968032837},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5122572779655457},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5049150586128235},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.4809676706790924},{"id":"https://openalex.org/keywords/prior-probability","display_name":"Prior probability","score":0.47597259283065796},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43869829177856445},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34279024600982666},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3059648275375366},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.08504286408424377}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7600637674331665},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6063432097434998},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5302644968032837},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5122572779655457},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5049150586128235},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.4809676706790924},{"id":"https://openalex.org/C177769412","wikidata":"https://www.wikidata.org/wiki/Q278090","display_name":"Prior probability","level":3,"score":0.47597259283065796},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43869829177856445},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34279024600982666},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3059648275375366},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.08504286408424377},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa450","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa450","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i292/33489078/btaa450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32657394","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32657394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7355277","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7355277","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa450","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa450","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i292/33489078/btaa450.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3146337093","display_name":"CSR: Medium: Approximate Membership Query Data Structures in Computational Biology and Storage","funder_award_id":"1763680","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3184792579","display_name":null,"funder_award_id":"CCF-1750472","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4624317431","display_name":null,"funder_award_id":"HG009937","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6262999909","display_name":null,"funder_award_id":"R01 HG009937","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6785428991","display_name":null,"funder_award_id":"CNS-1763680","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3043250694.pdf","grobid_xml":"https://content.openalex.org/works/W3043250694.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1847439710","https://openalex.org/W1999574084","https://openalex.org/W2022097310","https://openalex.org/W2069089843","https://openalex.org/W2102212449","https://openalex.org/W2135937351","https://openalex.org/W2152559563","https://openalex.org/W2474980444","https://openalex.org/W2563835520","https://openalex.org/W2592811885","https://openalex.org/W2725988230","https://openalex.org/W2751468300","https://openalex.org/W2792693509","https://openalex.org/W2794891507","https://openalex.org/W2805619986","https://openalex.org/W2805837749","https://openalex.org/W2810756255","https://openalex.org/W2883771740","https://openalex.org/W2886142860","https://openalex.org/W2889453805","https://openalex.org/W2896482460","https://openalex.org/W2898718502","https://openalex.org/W2899348912","https://openalex.org/W2900510132","https://openalex.org/W2901677030","https://openalex.org/W2914329269","https://openalex.org/W2924067995","https://openalex.org/W2943693794","https://openalex.org/W2944073176","https://openalex.org/W2949148097","https://openalex.org/W2949177718","https://openalex.org/W2951217100","https://openalex.org/W2951381561","https://openalex.org/W2951506174","https://openalex.org/W2954555796","https://openalex.org/W2970633838","https://openalex.org/W2971748677","https://openalex.org/W2978541146","https://openalex.org/W2980495984","https://openalex.org/W2996426546","https://openalex.org/W4231157025","https://openalex.org/W6749307547","https://openalex.org/W6752999557","https://openalex.org/W6759857468"],"related_works":["https://openalex.org/W4386190339","https://openalex.org/W2968424575","https://openalex.org/W2562263695","https://openalex.org/W2135187896","https://openalex.org/W2147201983","https://openalex.org/W2015518264","https://openalex.org/W2795035211","https://openalex.org/W2160108762","https://openalex.org/W2017034551","https://openalex.org/W2042102171"],"abstract_inverted_index":{"The":[0],"information":[1],"sharing":[2],"model":[3],"is":[4,9,14],"included":[5],"in":[6,11],"alevin":[7],"and":[8],"implemented":[10],"C++14.":[12],"It":[13],"available":[15],"as":[16,24],"open-source":[17],"software,":[18],"under":[19],"GPL":[20],"v3,":[21],"at":[22],"https://github.com/COMBINE-lab/salmon":[23],"of":[25],"version":[26],"1.1.0.":[27]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
