{"id":"https://openalex.org/W3043149968","doi":"https://doi.org/10.1093/bioinformatics/btaa446","title":"Distance indexing and seed clustering in sequence graphs","display_name":"Distance indexing and seed clustering in sequence graphs","publication_year":2020,"publication_date":"2020-06-04","ids":{"openalex":"https://openalex.org/W3043149968","doi":"https://doi.org/10.1093/bioinformatics/btaa446","mag":"3043149968","pmid":"https://pubmed.ncbi.nlm.nih.gov/32657356"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i146/33488679/btaa446.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i146/33488679/btaa446.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058387112","display_name":"Xian Chang","orcid":"https://orcid.org/0000-0002-3801-4542"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xian Chang","raw_affiliation_strings":["Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054998077","display_name":"Jordan M. Eizenga","orcid":"https://orcid.org/0000-0001-8345-8356"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan Eizenga","raw_affiliation_strings":["Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031360521","display_name":"Adam M. Novak","orcid":"https://orcid.org/0000-0001-5828-047X"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam M Novak","raw_affiliation_strings":["Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066730758","display_name":"Jouni Sir\u00e9n","orcid":"https://orcid.org/0000-0001-5828-4139"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jouni Sir\u00e9n","raw_affiliation_strings":["Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Engineering, University of California Santa Cruz Genomics Institute , Santa Cruz, CA 95060, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5058387112"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.9276,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.86254112,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"Supplement_1","first_page":"i146","last_page":"i153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7710728645324707},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6946314573287964},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6428247094154358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5666165351867676},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2751091718673706},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2674689292907715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23980924487113953},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09712159633636475}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7710728645324707},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6946314573287964},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6428247094154358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5666165351867676},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2751091718673706},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2674689292907715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23980924487113953},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09712159633636475}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i146/33488679/btaa446.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32657356","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32657356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt189317fv","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/189317fv","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 36, iss Supplement_1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7355256","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7355256","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa446","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa446","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/Supplement_1/i146/33488679/btaa446.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1623698995","display_name":null,"funder_award_id":"U41 HG007234","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G1765775889","display_name":"GENCODE: comprehensive reference genome annotation for human and mouse","funder_award_id":"5u24hg007234-10","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1824916433","display_name":null,"funder_award_id":"T32 HG008345","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3344988642","display_name":null,"funder_award_id":"R01HG010485","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3698606120","display_name":null,"funder_award_id":"R01 HG010053","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4810168628","display_name":"UC Santa Cruz Training Program In Genomic Sciences","funder_award_id":"5t32hg008345-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G499495141","display_name":"Unbiased analysis of genomic correlates of gene expression in health and disease","funder_award_id":"5u01hl137183-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G514126070","display_name":null,"funder_award_id":"U01HL137183","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G526700612","display_name":null,"funder_award_id":"U54HG007990","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6369178755","display_name":"A Unified Nanopore Platform for Direct Sequencing of Individual Full Length RNA Strands Bearing Modified Nucleotides","funder_award_id":"5r01hg010053-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8824438077","display_name":"BD2K Consortium Activities","funder_award_id":"5u54hg007990-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3043149968.pdf","grobid_xml":"https://content.openalex.org/works/W3043149968.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1418507783","https://openalex.org/W1559814459","https://openalex.org/W1969483458","https://openalex.org/W2008570937","https://openalex.org/W2129264270","https://openalex.org/W2147733682","https://openalex.org/W2169528473","https://openalex.org/W2194172909","https://openalex.org/W2399612975","https://openalex.org/W2603734366","https://openalex.org/W2788099780","https://openalex.org/W2888300707","https://openalex.org/W2895284333","https://openalex.org/W2950122868","https://openalex.org/W2952366981","https://openalex.org/W2952746707","https://openalex.org/W2952870794","https://openalex.org/W3098304617"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W2130160813","https://openalex.org/W2054476758"],"abstract_inverted_index":{"MOTIVATION:":[0],"Graph":[1],"representations":[2],"of":[3,7,29,135,148,165],"genomes":[4,43],"are":[5,39,77,138,170],"capable":[6],"expressing":[8],"more":[9,46],"genetic":[10],"variation":[11],"and":[12,140,169],"can":[13],"therefore":[14],"better":[15],"represent":[16],"a":[17,61,67,105,109,128,145],"population":[18],"than":[19],"standard":[20],"linear":[21,34,42,62],"genomes.":[22],"However,":[23],"due":[24],"to":[25,33,79,86,124,142],"the":[26,87,99,121,166],"greater":[27],"complexity":[28],"genome":[30,49,63,153],"graphs":[31],"relative":[32],"genomes,":[35],"some":[36],"functions":[37],"that":[38,57,119,132],"trivial":[40],"on":[41,104,127],"become":[44],"much":[45],"difficult":[47],"in":[48,60,66],"graphs.":[50,154],"Calculating":[51],"distance":[52,75,101,111,122],"is":[53,58],"one":[54],"such":[55,74],"function":[56],"simple":[59],"but":[64],"complicated":[65],"graph":[68,107],"context.":[69],"In":[70],"read":[71],"mapping":[72,149],"algorithms":[73,137,150,159],"calculations":[76],"fundamental":[78],"determining":[80],"if":[81],"seed":[82],"alignments":[83],"could":[84],"belong":[85],"same":[88],"mapping.":[89],"RESULTS:":[90],"We":[91,113,130],"have":[92,114,160],"developed":[93,116],"an":[94,117],"algorithm":[95,118],"for":[96,144],"quickly":[97],"calculating":[98],"minimum":[100,110],"between":[102],"positions":[103],"sequence":[106],"using":[108],"index.":[112],"also":[115],"uses":[120],"index":[123],"cluster":[125],"seeds":[126],"graph.":[129],"demonstrate":[131],"our":[133],"implementations":[134],"these":[136],"efficient":[139],"practical":[141],"use":[143],"new":[146],"generation":[147],"based":[151],"upon":[152],"AVAILABILITY":[155],"AND":[156],"IMPLEMENTATION:":[157],"Our":[158],"been":[161],"implemented":[162],"as":[163],"part":[164],"vg":[167],"toolkit":[168],"available":[171],"at":[172],"https://github.com/vgteam/vg.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2025-10-10T00:00:00"}
