{"id":"https://openalex.org/W3021693692","doi":"https://doi.org/10.1093/bioinformatics/btaa279","title":"An <i>in silico</i> model of LINE-1-mediated neoplastic evolution","display_name":"An <i>in silico</i> model of LINE-1-mediated neoplastic evolution","publication_year":2020,"publication_date":"2020-04-24","ids":{"openalex":"https://openalex.org/W3021693692","doi":"https://doi.org/10.1093/bioinformatics/btaa279","mag":"3021693692","pmid":"https://pubmed.ncbi.nlm.nih.gov/32365170"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa279","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa279","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049574162","display_name":"Jack LeBien","orcid":"https://orcid.org/0000-0001-7652-4124"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jack LeBien","raw_affiliation_strings":["Department of Biological Sciences , The University of New, Orleans, New Orleans, LA 70148, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences , The University of New, Orleans, New Orleans, LA 70148, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039846408","display_name":"Gerald McCollam","orcid":"https://orcid.org/0000-0003-2171-999X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gerald McCollam","raw_affiliation_strings":["Advanced Academic Programs , John Hopkins University, Baltimore, MD 21218, USA"],"affiliations":[{"raw_affiliation_string":"Advanced Academic Programs , John Hopkins University, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086244426","display_name":"Joel Atallah","orcid":"https://orcid.org/0000-0003-2425-2395"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Atallah","raw_affiliation_strings":["Department of Biological Sciences , The University of New, Orleans, New Orleans, LA 70148, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences , The University of New, Orleans, New Orleans, LA 70148, USA","institution_ids":["https://openalex.org/I192396691"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049574162"],"corresponding_institution_ids":["https://openalex.org/I192396691"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02350324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"36","issue":"14","first_page":"4144","last_page":"4153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7118737697601318},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.5858228206634521},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.582593560218811},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5489223599433899},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.5483003258705139},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5242379307746887},{"id":"https://openalex.org/keywords/transposition","display_name":"Transposition (logic)","score":0.511856734752655},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.509636402130127},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5063542127609253},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5009853839874268},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4876207411289215},{"id":"https://openalex.org/keywords/germline-mutation","display_name":"Germline mutation","score":0.43671494722366333},{"id":"https://openalex.org/keywords/evolutionary-dynamics","display_name":"Evolutionary dynamics","score":0.4356313943862915},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.30762994289398193},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.14541387557983398}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7118737697601318},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.5858228206634521},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.582593560218811},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5489223599433899},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.5483003258705139},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5242379307746887},{"id":"https://openalex.org/C12455157","wikidata":"https://www.wikidata.org/wiki/Q7835331","display_name":"Transposition (logic)","level":2,"score":0.511856734752655},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.509636402130127},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5063542127609253},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5009853839874268},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4876207411289215},{"id":"https://openalex.org/C13514818","wikidata":"https://www.wikidata.org/wiki/Q5552256","display_name":"Germline mutation","level":4,"score":0.43671494722366333},{"id":"https://openalex.org/C171578705","wikidata":"https://www.wikidata.org/wiki/Q5418700","display_name":"Evolutionary dynamics","level":3,"score":0.4356313943862915},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.30762994289398193},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.14541387557983398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020084","descriptor_name":"Long Interspersed Nucleotide Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020084","descriptor_name":"Long Interspersed Nucleotide Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020084","descriptor_name":"Long Interspersed Nucleotide Elements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa279","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa279","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32365170","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32365170","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5199999809265137,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G5705804809","display_name":null,"funder_award_id":"LEQSF (2017-20)-RD-A-26","funder_id":"https://openalex.org/F4320309392","funder_display_name":"Louisiana Board of Regents"}],"funders":[{"id":"https://openalex.org/F4320309392","display_name":"Louisiana Board of Regents","ror":"https://ror.org/00jv89z46"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1609531945","https://openalex.org/W1835750525","https://openalex.org/W1972346070","https://openalex.org/W1980126223","https://openalex.org/W1997724443","https://openalex.org/W2008907352","https://openalex.org/W2018177575","https://openalex.org/W2020645517","https://openalex.org/W2026519705","https://openalex.org/W2032679533","https://openalex.org/W2035120673","https://openalex.org/W2037930474","https://openalex.org/W2045807857","https://openalex.org/W2056788947","https://openalex.org/W2059437408","https://openalex.org/W2062026173","https://openalex.org/W2062238129","https://openalex.org/W2064155066","https://openalex.org/W2066227234","https://openalex.org/W2084924279","https://openalex.org/W2087056550","https://openalex.org/W2088981347","https://openalex.org/W2091279754","https://openalex.org/W2094122486","https://openalex.org/W2097550154","https://openalex.org/W2101924219","https://openalex.org/W2115520939","https://openalex.org/W2118155162","https://openalex.org/W2119244748","https://openalex.org/W2127625120","https://openalex.org/W2138309685","https://openalex.org/W2146892790","https://openalex.org/W2152447080","https://openalex.org/W2154422767","https://openalex.org/W2158375784","https://openalex.org/W2160548451","https://openalex.org/W2170217625","https://openalex.org/W2347011735","https://openalex.org/W2378183100","https://openalex.org/W2399777075","https://openalex.org/W2556488070","https://openalex.org/W2556847556","https://openalex.org/W2587668080","https://openalex.org/W2596368986","https://openalex.org/W2611387862","https://openalex.org/W2617921759","https://openalex.org/W2619905078","https://openalex.org/W2806991293","https://openalex.org/W2810601935","https://openalex.org/W2848963100","https://openalex.org/W2894573839","https://openalex.org/W2928206577","https://openalex.org/W2929611872","https://openalex.org/W2952424164","https://openalex.org/W2961102324","https://openalex.org/W4252708396","https://openalex.org/W6636389747"],"related_works":["https://openalex.org/W2063677980","https://openalex.org/W2026307780","https://openalex.org/W2135134199","https://openalex.org/W2363061577","https://openalex.org/W2142244856","https://openalex.org/W1965813924","https://openalex.org/W2034211960","https://openalex.org/W1501118784","https://openalex.org/W2065978184","https://openalex.org/W2008276103"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2020-05-13T00:00:00"}
