{"id":"https://openalex.org/W3006936835","doi":"https://doi.org/10.1093/bioinformatics/btaa274","title":"OpenBioLink: a benchmarking framework for large-scale biomedical link prediction","display_name":"OpenBioLink: a benchmarking framework for large-scale biomedical link prediction","publication_year":2020,"publication_date":"2020-04-21","ids":{"openalex":"https://openalex.org/W3006936835","doi":"https://doi.org/10.1093/bioinformatics/btaa274","mag":"3006936835","pmid":"https://pubmed.ncbi.nlm.nih.gov/32339214"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4097/33458979/btaa274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4097/33458979/btaa274.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030693292","display_name":"Anna Breit","orcid":"https://orcid.org/0000-0001-6553-4175"},"institutions":[{"id":"https://openalex.org/I161878677","display_name":"Austrian Research Institute for Artificial Intelligence","ror":"https://ror.org/04j47vk14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I161878677","https://openalex.org/I4210107880"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Anna Breit","raw_affiliation_strings":["Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]},{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015625692","display_name":"Simon Ott","orcid":"https://orcid.org/0000-0002-9415-3969"},"institutions":[{"id":"https://openalex.org/I161878677","display_name":"Austrian Research Institute for Artificial Intelligence","ror":"https://ror.org/04j47vk14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I161878677","https://openalex.org/I4210107880"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Simon Ott","raw_affiliation_strings":["Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]},{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059157192","display_name":"Asan Agibetov","orcid":"https://orcid.org/0000-0003-0096-0143"},"institutions":[{"id":"https://openalex.org/I161878677","display_name":"Austrian Research Institute for Artificial Intelligence","ror":"https://ror.org/04j47vk14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I161878677","https://openalex.org/I4210107880"]},{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Asan Agibetov","raw_affiliation_strings":["Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria"],"affiliations":[{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]},{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082184364","display_name":"Matthias Samwald","orcid":"https://orcid.org/0000-0002-4855-2571"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]},{"id":"https://openalex.org/I161878677","display_name":"Austrian Research Institute for Artificial Intelligence","ror":"https://ror.org/04j47vk14","country_code":"AT","type":"facility","lineage":["https://openalex.org/I161878677","https://openalex.org/I4210107880"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Matthias Samwald","raw_affiliation_strings":["Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","Medical University of Vienna"],"affiliations":[{"raw_affiliation_string":"Section for Artificial Intelligence and Decision Support , Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna 1090, Austria","institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"]},{"raw_affiliation_string":"Medical University of Vienna","institution_ids":["https://openalex.org/I76134821"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082184364"],"corresponding_institution_ids":["https://openalex.org/I161878677","https://openalex.org/I76134821"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3338,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56053338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"13","first_page":"4097","last_page":"4098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.9165343046188354},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.795225977897644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7856500744819641},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5575098395347595},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5438450574874878},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5281664729118347},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.5200545191764832},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5045751333236694},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4694995880126953},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.43288499116897583},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37978848814964294},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37483251094818115},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13006585836410522}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.9165343046188354},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.795225977897644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7856500744819641},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5575098395347595},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5438450574874878},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5281664729118347},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.5200545191764832},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5045751333236694},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4694995880126953},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.43288499116897583},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37978848814964294},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37483251094818115},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13006585836410522},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4097/33458979/btaa274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32339214","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32339214","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1912.04616","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1912.04616","pdf_url":"https://arxiv.org/pdf/1912.04616","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3006936835","is_oa":true,"landing_page_url":"https://arxiv.org/abs/1912.04616","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1912.04616","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1912.04616","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4097/33458979/btaa274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3006936835.pdf","grobid_xml":"https://content.openalex.org/works/W3006936835.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2127795553","https://openalex.org/W2184957013","https://openalex.org/W2187413858","https://openalex.org/W2250184916","https://openalex.org/W2398915717","https://openalex.org/W2562531153","https://openalex.org/W2804186728","https://openalex.org/W2949311246","https://openalex.org/W2951364005","https://openalex.org/W2964116313","https://openalex.org/W2977707586","https://openalex.org/W6751587247"],"related_works":["https://openalex.org/W3126805614","https://openalex.org/W3153939186","https://openalex.org/W2565914381","https://openalex.org/W3117646689","https://openalex.org/W3106224367","https://openalex.org/W3096074039","https://openalex.org/W3134755123","https://openalex.org/W2577764742","https://openalex.org/W3044705751","https://openalex.org/W3111709423","https://openalex.org/W3157636265","https://openalex.org/W2307584008","https://openalex.org/W3167381487","https://openalex.org/W3134089816","https://openalex.org/W3196561364","https://openalex.org/W2950801872","https://openalex.org/W3134993044","https://openalex.org/W2768115058","https://openalex.org/W3157737242","https://openalex.org/W3104324110"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
