{"id":"https://openalex.org/W3017099913","doi":"https://doi.org/10.1093/bioinformatics/btaa249","title":"Serpentine: a flexible 2D binning method for differential Hi-C analysis","display_name":"Serpentine: a flexible 2D binning method for differential Hi-C analysis","publication_year":2020,"publication_date":"2020-04-13","ids":{"openalex":"https://openalex.org/W3017099913","doi":"https://doi.org/10.1093/bioinformatics/btaa249","mag":"3017099913","pmid":"https://pubmed.ncbi.nlm.nih.gov/32311033"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa249","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3645/33437230/btaa249.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3645/33437230/btaa249.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073275073","display_name":"Lyam Baudry","orcid":"https://orcid.org/0000-0002-9283-674X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I182627622","display_name":"Universit\u00e9 Sorbonne Nouvelle","ror":"https://ror.org/03z6jp965","country_code":"FR","type":"education","lineage":["https://openalex.org/I182627622"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lyam Baudry","raw_affiliation_strings":["Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France","Sorbonne Universit\u00e9 , Coll\u00e8ge Doctoral, Paris 75005, France"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9 , Coll\u00e8ge Doctoral, Paris 75005, France","institution_ids":["https://openalex.org/I182627622","https://openalex.org/I39804081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066372331","display_name":"Ga\u00ebl A. Millot","orcid":"https://orcid.org/0000-0002-0591-3509"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ga\u00ebl A Millot","raw_affiliation_strings":["D\u00e9partement Biologie Computationnelle , Hub de Bioinformatique et Biostatistique, Institut Pasteur, USR 3756 CNRS, Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement Biologie Computationnelle , Hub de Bioinformatique et Biostatistique, Institut Pasteur, USR 3756 CNRS, Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104992727","display_name":"Agn\u00e8s Thierry","orcid":"https://orcid.org/0000-0002-1566-0664"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Agnes Thierry","raw_affiliation_strings":["Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045736877","display_name":"Romain Koszul","orcid":"https://orcid.org/0000-0002-3086-1173"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Romain Koszul","raw_affiliation_strings":["Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058832006","display_name":"Vittore F. Scolari","orcid":"https://orcid.org/0000-0003-3490-0579"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vittore F Scolari","raw_affiliation_strings":["Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Institut Pasteur , Unit\u00e9 R\u00e9gulation Spatiale des G\u00e9nomes, UMR3525 CNRS, Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045736877","https://openalex.org/A5058832006"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5023,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.82117442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"12","first_page":"3645","last_page":"3651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7020249366760254},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.636239230632782},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.49230897426605225},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.46715468168258667},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.4606807827949524},{"id":"https://openalex.org/keywords/envelope","display_name":"Envelope (radar)","score":0.4291064739227295},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40967464447021484},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3245643973350525},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2846144735813141},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.17239651083946228},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09597587585449219}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7020249366760254},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.636239230632782},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.49230897426605225},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.46715468168258667},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.4606807827949524},{"id":"https://openalex.org/C65155139","wikidata":"https://www.wikidata.org/wiki/Q5380912","display_name":"Envelope (radar)","level":3,"score":0.4291064739227295},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40967464447021484},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3245643973350525},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2846144735813141},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.17239651083946228},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09597587585449219},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa249","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3645/33437230/btaa249.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32311033","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32311033","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:pasteur-02612482v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-02612482","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2020, &#x27E8;10.1093/bioinformatics/btaa249&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:7320618","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320618","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa249","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3645/33437230/btaa249.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3017099913.pdf","grobid_xml":"https://content.openalex.org/works/W3017099913.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1701083935","https://openalex.org/W1862913282","https://openalex.org/W1995379311","https://openalex.org/W2020912279","https://openalex.org/W2057310660","https://openalex.org/W2073026107","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2111032472","https://openalex.org/W2113783443","https://openalex.org/W2118117928","https://openalex.org/W2150455380","https://openalex.org/W2165406444","https://openalex.org/W2606086658","https://openalex.org/W2625231465","https://openalex.org/W2883065628","https://openalex.org/W2887206273","https://openalex.org/W2911472928","https://openalex.org/W2942489120","https://openalex.org/W2950265312","https://openalex.org/W2970796856","https://openalex.org/W2982127583"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W2002770077","https://openalex.org/W3131163342","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2361728394","https://openalex.org/W2166271660","https://openalex.org/W3089582840","https://openalex.org/W2352631095"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
