{"id":"https://openalex.org/W3016525657","doi":"https://doi.org/10.1093/bioinformatics/btaa244","title":"TranspoScope: interactive visualization of retrotransposon insertions","display_name":"TranspoScope: interactive visualization of retrotransposon insertions","publication_year":2020,"publication_date":"2020-04-09","ids":{"openalex":"https://openalex.org/W3016525657","doi":"https://doi.org/10.1093/bioinformatics/btaa244","mag":"3016525657","pmid":"https://pubmed.ncbi.nlm.nih.gov/32298413"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa244","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa244","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320613","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083411833","display_name":"Mark Grivainis","orcid":"https://orcid.org/0000-0001-8156-7153"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Grivainis","raw_affiliation_strings":["Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","Institute for Systems Genetics"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Institute for Systems Genetics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073887049","display_name":"Zuojian Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zuojian Tang","raw_affiliation_strings":["Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","Institute for Systems Genetics"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Institute for Systems Genetics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065792746","display_name":"David Feny\u00f6","orcid":"https://orcid.org/0000-0001-5049-3825"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Feny\u00f6","raw_affiliation_strings":["Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","Institute for Systems Genetics"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Pharmacology , NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Institute for Systems Genetics","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065792746"],"corresponding_institution_ids":["https://openalex.org/I57206974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01911112,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"36","issue":"12","first_page":"3877","last_page":"3878"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retrotransposon","display_name":"Retrotransposon","score":0.9634720087051392},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6918507814407349},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6021794676780701},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.537487804889679},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4846420884132385},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.464094340801239},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4586823284626007},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.42347362637519836},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38225042819976807},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.21642687916755676},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.175672709941864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.11027562618255615},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.06780609488487244}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.9634720087051392},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6918507814407349},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6021794676780701},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.537487804889679},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4846420884132385},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.464094340801239},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4586823284626007},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.42347362637519836},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38225042819976807},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.21642687916755676},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.175672709941864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.11027562618255615},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.06780609488487244}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa244","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa244","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32298413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32298413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7320613","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7320613","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4438345489","display_name":null,"funder_award_id":"U24CA210972","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6073742716","display_name":null,"funder_award_id":"P50GM107632","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6536242378","display_name":null,"funder_award_id":"P01AG051449","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2091279754","https://openalex.org/W2153586836","https://openalex.org/W2168909179","https://openalex.org/W2170551349","https://openalex.org/W2336957559","https://openalex.org/W2579869603","https://openalex.org/W2750782486","https://openalex.org/W2765745983","https://openalex.org/W2938989721"],"related_works":["https://openalex.org/W2137282308","https://openalex.org/W2094923272","https://openalex.org/W1971924113","https://openalex.org/W2112373845","https://openalex.org/W1988495745","https://openalex.org/W2281520406","https://openalex.org/W2091479795","https://openalex.org/W2051541780","https://openalex.org/W111131418","https://openalex.org/W2114924552"],"abstract_inverted_index":{"TranspoScope's":[0],"source":[1],"code,":[2],"as":[3,5],"well":[4],"installation":[6],"instructions,":[7],"are":[8],"available":[9],"at":[10],"https://github.com/FenyoLab/transposcope.":[11]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
