{"id":"https://openalex.org/W3015062804","doi":"https://doi.org/10.1093/bioinformatics/btaa232","title":"CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme","display_name":"CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W3015062804","doi":"https://doi.org/10.1093/bioinformatics/btaa232","mag":"3015062804","pmid":"https://pubmed.ncbi.nlm.nih.gov/32259207"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa232","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3703/33437130/btaa232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3703/33437130/btaa232.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104104120","display_name":"Hossein Asghari","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hossein Asghari","raw_affiliation_strings":["School of Computing Science , Simon Fraser University, Burnaby, BC V5A1S6, Canada","Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science , Simon Fraser University, Burnaby, BC V5A1S6, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048247983","display_name":"Yen\u2010Yi Lin","orcid":"https://orcid.org/0000-0002-4379-1231"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yen-Yi Lin","raw_affiliation_strings":["Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada"],"affiliations":[{"raw_affiliation_string":"Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016539108","display_name":"Yang Xu","orcid":"https://orcid.org/0000-0001-8997-5995"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yang Xu","raw_affiliation_strings":["Faculty of Medicine , University of British Columbia, Vancouver, BC V6T 1Z3, Canada"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine , University of British Columbia, Vancouver, BC V6T 1Z3, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081857712","display_name":"Ehsan Haghshenas","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ehsan Haghshenas","raw_affiliation_strings":["School of Computing Science , Simon Fraser University, Burnaby, BC V5A1S6, Canada","Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science , Simon Fraser University, Burnaby, BC V5A1S6, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050325886","display_name":"Colin C. Collins","orcid":"https://orcid.org/0000-0001-6148-6110"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Colin C Collins","raw_affiliation_strings":["Department of Urologic Sciences , University of British Columbia, Vancouver, BC V5Z1M9, Canada","Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Urologic Sciences , University of British Columbia, Vancouver, BC V5Z1M9, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006644128","display_name":"Faraz Hach","orcid":"https://orcid.org/0000-0003-1143-0172"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Faraz Hach","raw_affiliation_strings":["Department of Urologic Sciences , University of British Columbia, Vancouver, BC V5Z1M9, Canada","Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Urologic Sciences , University of British Columbia, Vancouver, BC V5Z1M9, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Vancouver Prostate Centre , Vancouver, BC V6H3Z6, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5006644128"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7399,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.84729839,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"36","issue":"12","first_page":"3703","last_page":"3711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9169999957084656,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.7118037343025208},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.6677511930465698},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.6636565923690796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5647638440132141},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4956320524215698},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40204358100891113},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4018113613128662},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23663851618766785},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20536279678344727},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19306045770645142},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1632082760334015}],"concepts":[{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.7118037343025208},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.6677511930465698},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.6636565923690796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5647638440132141},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4956320524215698},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40204358100891113},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4018113613128662},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23663851618766785},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20536279678344727},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19306045770645142},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1632082760334015},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa232","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3703/33437130/btaa232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32259207","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32259207","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa232","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3703/33437130/btaa232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3015062804.pdf","grobid_xml":"https://content.openalex.org/works/W3015062804.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1541974580","https://openalex.org/W1566841623","https://openalex.org/W1770991729","https://openalex.org/W1846631206","https://openalex.org/W1966411071","https://openalex.org/W1981726010","https://openalex.org/W2017919052","https://openalex.org/W2023139734","https://openalex.org/W2024248021","https://openalex.org/W2029989907","https://openalex.org/W2034305079","https://openalex.org/W2051477788","https://openalex.org/W2054891772","https://openalex.org/W2058835062","https://openalex.org/W2086055453","https://openalex.org/W2126144698","https://openalex.org/W2126938291","https://openalex.org/W2140673900","https://openalex.org/W2147625377","https://openalex.org/W2147806662","https://openalex.org/W2152719653","https://openalex.org/W2157539385","https://openalex.org/W2169456326","https://openalex.org/W2194134194","https://openalex.org/W2196247406","https://openalex.org/W2238930303","https://openalex.org/W2286014095","https://openalex.org/W2289846425","https://openalex.org/W2318224129","https://openalex.org/W2323326409","https://openalex.org/W2323385078","https://openalex.org/W2464424326","https://openalex.org/W2531297636","https://openalex.org/W2599812844","https://openalex.org/W2622004629","https://openalex.org/W2747157901","https://openalex.org/W2764294957","https://openalex.org/W2889334297","https://openalex.org/W2909184366","https://openalex.org/W2913336364","https://openalex.org/W2944763449","https://openalex.org/W2950811896","https://openalex.org/W2952944477","https://openalex.org/W3014126386"],"related_works":["https://openalex.org/W2029220916","https://openalex.org/W2274928342","https://openalex.org/W4247092347","https://openalex.org/W1552032432","https://openalex.org/W1505791290","https://openalex.org/W2024248021","https://openalex.org/W3174330474","https://openalex.org/W2971531865","https://openalex.org/W4388307780","https://openalex.org/W4396639799"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
