{"id":"https://openalex.org/W3012976996","doi":"https://doi.org/10.1093/bioinformatics/btaa218","title":"PolishEM: image enhancement in FIB\u2013SEM","display_name":"PolishEM: image enhancement in FIB\u2013SEM","publication_year":2020,"publication_date":"2020-03-24","ids":{"openalex":"https://openalex.org/W3012976996","doi":"https://doi.org/10.1093/bioinformatics/btaa218","mag":"3012976996"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3947/33437458/btaa218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3947/33437458/btaa218.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044231334","display_name":"Jos\u00e9\u2010Jes\u00fas Fern\u00e1ndez","orcid":"https://orcid.org/0000-0003-2222-3355"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jose-Jesus Fernandez","raw_affiliation_strings":["Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain"],"affiliations":[{"raw_affiliation_string":"Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006208597","display_name":"Teobaldo E. Torres","orcid":"https://orcid.org/0000-0002-6116-9331"},"institutions":[{"id":"https://openalex.org/I4210132055","display_name":"Instituto de Nanociencia y Materiales de Arag\u00f3n","ror":"https://ror.org/031n2c920","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I255234318","https://openalex.org/I4210132055"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Teobaldo E Torres","raw_affiliation_strings":["Instituto de Nanociencia de Arag\u00f3n","Laboratorio de Microscop\u00edas Avanzadas"],"affiliations":[{"raw_affiliation_string":"Instituto de Nanociencia de Arag\u00f3n","institution_ids":["https://openalex.org/I4210132055"]},{"raw_affiliation_string":"Laboratorio de Microscop\u00edas Avanzadas","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102929328","display_name":"Eva Martin\u2010Solana","orcid":"https://orcid.org/0000-0002-5640-1503"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eva Martin-Solana","raw_affiliation_strings":["Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain"],"affiliations":[{"raw_affiliation_string":"Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038447956","display_name":"Gerardo F. Goya","orcid":"https://orcid.org/0000-0003-1558-9279"},"institutions":[{"id":"https://openalex.org/I255234318","display_name":"Universidad de Zaragoza","ror":"https://ror.org/012a91z28","country_code":"ES","type":"education","lineage":["https://openalex.org/I255234318"]},{"id":"https://openalex.org/I4210132055","display_name":"Instituto de Nanociencia y Materiales de Arag\u00f3n","ror":"https://ror.org/031n2c920","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I255234318","https://openalex.org/I4210132055"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gerardo F Goya","raw_affiliation_strings":["Departamento de F\u00edsica de la Materia Condensada , Universidad de Zaragoza, Zaragoza, 50009 Spain","Instituto de Nanociencia de Arag\u00f3n"],"affiliations":[{"raw_affiliation_string":"Departamento de F\u00edsica de la Materia Condensada , Universidad de Zaragoza, Zaragoza, 50009 Spain","institution_ids":["https://openalex.org/I255234318"]},{"raw_affiliation_string":"Instituto de Nanociencia de Arag\u00f3n","institution_ids":["https://openalex.org/I4210132055"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046610079","display_name":"Mar\u00eda Rosario Fern\u00e1ndez\u2010Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-9128-5296"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria-Rosario Fernandez-Fernandez","raw_affiliation_strings":["Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain"],"affiliations":[{"raw_affiliation_string":"Consejo Superior de Investigaciones Cient\u00edficas (CNB-CSIC) , Madrid, 28049 Spain","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044231334"],"corresponding_institution_ids":["https://openalex.org/I134820265"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7151,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.80632054,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"12","first_page":"3947","last_page":"3948"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14117","display_name":"Integrated Circuits and Semiconductor Failure Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.6212725639343262},{"id":"https://openalex.org/keywords/image-enhancement","display_name":"Image enhancement","score":0.5330658555030823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4451540410518646},{"id":"https://openalex.org/keywords/scanning-electron-microscope","display_name":"Scanning electron microscope","score":0.42291027307510376},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.40160760283470154},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.39308351278305054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3616557717323303},{"id":"https://openalex.org/keywords/composite-material","display_name":"Composite material","score":0.11795300245285034}],"concepts":[{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.6212725639343262},{"id":"https://openalex.org/C3017601658","wikidata":"https://www.wikidata.org/wiki/Q545981","display_name":"Image enhancement","level":3,"score":0.5330658555030823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4451540410518646},{"id":"https://openalex.org/C26771246","wikidata":"https://www.wikidata.org/wiki/Q321095","display_name":"Scanning electron microscope","level":2,"score":0.42291027307510376},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.40160760283470154},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.39308351278305054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3616557717323303},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.11795300245285034}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3947/33437458/btaa218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:zaguan.unizar.es:156655","is_oa":true,"landing_page_url":"http://zaguan.unizar.es/record/156655","pdf_url":null,"source":{"id":"https://openalex.org/S4306401812","display_name":"Zaguan (University of Zaragoza Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I255234318","host_organization_name":"Universidad de Zaragoza","host_organization_lineage":["https://openalex.org/I255234318"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:digital.csic.es:10261/229671","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/229671","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa218","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3947/33437458/btaa218.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1381435104","display_name":null,"funder_award_id":"SAF2017-84565-R","funder_id":"https://openalex.org/F4320321595","funder_display_name":"Federaci\u00f3n Espa\u00f1ola de Enfermedades Raras"}],"funders":[{"id":"https://openalex.org/F4320308798","display_name":"Albert Ellis Institute","ror":"https://ror.org/0027wxf59"},{"id":"https://openalex.org/F4320321595","display_name":"Federaci\u00f3n Espa\u00f1ola de Enfermedades Raras","ror":"https://ror.org/0348bpk17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3012976996.pdf","grobid_xml":"https://content.openalex.org/works/W3012976996.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2029101220","https://openalex.org/W2034184519","https://openalex.org/W2160341948","https://openalex.org/W2167279371","https://openalex.org/W2612564956","https://openalex.org/W2959317056","https://openalex.org/W4211114670"],"related_works":["https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2772917594","https://openalex.org/W2775347418","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"We":[2],"have":[3],"developed":[4,73],"a":[5,24],"software":[6],"tool":[7],"to":[8],"improve":[9],"the":[10,34],"image":[11],"quality":[12],"in":[13,48,74],"focused":[14],"ion":[15],"beam\u2013scanning":[16],"electron":[17],"microscopy":[18],"(FIB\u2013SEM)":[19],"stacks:":[20],"PolishEM.":[21],"Based":[22],"on":[23,64],"Gaussian":[25],"blur":[26,35],"model,":[27],"it":[28],"automatically":[29],"estimates":[30],"and":[31,68,79,84],"compensates":[32],"for":[33,44,56,81],"affecting":[36],"each":[37],"individual":[38],"image.":[39],"It":[40],"also":[41],"includes":[42],"correction":[43],"artifacts":[45],"commonly":[46],"arising":[47],"FIB\u2013SEM":[49,62],"(e.g.":[50],"curtaining).":[51],"PolishEM":[52,70],"has":[53,71],"been":[54,72],"optimized":[55],"an":[57],"efficient":[58],"processing":[59],"of":[60],"huge":[61],"stacks":[63],"standard":[65],"computers.":[66],"Availability":[67],"implementation":[69],"C.":[75],"GPL":[76],"source":[77],"code":[78],"binaries":[80],"Linux,":[82],"OSX":[83],"Windows":[85],"are":[86,94],"available":[87,95],"at":[88,96],"http://www.cnb.csic.es/%7ejjfernandez/polishem.":[89],"Supplementary":[90,92],"information":[91],"data":[93],"Bioinformatics":[97],"online.":[98]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2020-04-03T00:00:00"}
