{"id":"https://openalex.org/W3012963494","doi":"https://doi.org/10.1093/bioinformatics/btaa212","title":"Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes","display_name":"Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes","publication_year":2020,"publication_date":"2020-03-23","ids":{"openalex":"https://openalex.org/W3012963494","doi":"https://doi.org/10.1093/bioinformatics/btaa212","mag":"3012963494","pmid":"https://pubmed.ncbi.nlm.nih.gov/32221617"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa212","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa212","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3871/33437290/btaa212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3871/33437290/btaa212.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100341812","display_name":"Xiangyang Li","orcid":"https://orcid.org/0000-0003-1313-633X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210119635","display_name":"Kaili University","ror":"https://ror.org/02hzqbc55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119635"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangyang Li","raw_affiliation_strings":["College of Environment and Life Sciences , Kaili University, Kaili 556011, China","Department of Environmental Science and Engineering , Fudan University, Shanghai 200433, China"],"affiliations":[{"raw_affiliation_string":"College of Environment and Life Sciences , Kaili University, Kaili 556011, China","institution_ids":["https://openalex.org/I4210119635"]},{"raw_affiliation_string":"Department of Environmental Science and Engineering , Fudan University, Shanghai 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101748255","display_name":"Fang Chen","orcid":"https://orcid.org/0000-0002-9615-3743"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Chen","raw_affiliation_strings":["School of Basic Medical Sciences , Shanxi Medical University, Taiyuan 030001, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences , Shanxi Medical University, Taiyuan 030001, China","institution_ids":["https://openalex.org/I17721919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029978692","display_name":"Yunpeng Chen","orcid":"https://orcid.org/0000-0002-9830-8980"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yunpeng Chen","raw_affiliation_strings":["Key Laboratory of Urban Agriculture of Ministry of Agriculture School of Agriculture and Biology , Shanghai Jiaotong University, Shanghai 200240, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Urban Agriculture of Ministry of Agriculture School of Agriculture and Biology , Shanghai Jiaotong University, Shanghai 200240, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100341812"],"corresponding_institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210119635"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0846,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.75912919,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"12","first_page":"3871","last_page":"3873"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9538193345069885},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7781391739845276},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5501750111579895},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49413374066352844},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.49040985107421875},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4831106662750244},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4268215000629425},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.417985200881958},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.415108859539032},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2086780071258545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1786476969718933},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16144299507141113}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9538193345069885},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7781391739845276},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5501750111579895},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49413374066352844},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.49040985107421875},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4831106662750244},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4268215000629425},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.417985200881958},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.415108859539032},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2086780071258545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1786476969718933},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16144299507141113}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa212","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa212","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3871/33437290/btaa212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32221617","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32221617","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa212","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa212","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3871/33437290/btaa212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5475419053","display_name":null,"funder_award_id":"(2019)1287","funder_id":"https://openalex.org/F4320322272","funder_display_name":"Guizhou Science and Technology Department"},{"id":"https://openalex.org/G5532695054","display_name":null,"funder_award_id":"21966015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6020711740","display_name":null,"funder_award_id":"21507012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7834480334","display_name":null,"funder_award_id":"2015M570329","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320322272","display_name":"Guizhou Science and Technology Department","ror":"https://ror.org/00kwnh405"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3012963494.pdf","grobid_xml":"https://content.openalex.org/works/W3012963494.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1991330646","https://openalex.org/W2004548026","https://openalex.org/W2008856488","https://openalex.org/W2045489348","https://openalex.org/W2114853012","https://openalex.org/W2153606717","https://openalex.org/W2765745983","https://openalex.org/W2809024516"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W190299232","https://openalex.org/W1521481095","https://openalex.org/W594361471","https://openalex.org/W2604964690","https://openalex.org/W2417897055","https://openalex.org/W2613359208","https://openalex.org/W2291334382","https://openalex.org/W1484205720"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
