{"id":"https://openalex.org/W3013532204","doi":"https://doi.org/10.1093/bioinformatics/btaa209","title":"<tt>annonex2embl</tt> : automatic preparation of annotated DNA sequences for bulk submissions to ENA","display_name":"<tt>annonex2embl</tt> : automatic preparation of annotated DNA sequences for bulk submissions to ENA","publication_year":2020,"publication_date":"2020-03-24","ids":{"openalex":"https://openalex.org/W3013532204","doi":"https://doi.org/10.1093/bioinformatics/btaa209","mag":"3013532204","pmid":"https://pubmed.ncbi.nlm.nih.gov/32227202"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3841/33437163/btaa209.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3841/33437163/btaa209.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021224578","display_name":"Michael Gruenstaeudl","orcid":"https://orcid.org/0000-0002-1666-1773"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Gruenstaeudl","raw_affiliation_strings":["Institut f\u00fcr Biologie , Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Berlin 14195, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biologie , Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5021224578"],"corresponding_institution_ids":["https://openalex.org/I75951250"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7511,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.68931658,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"12","first_page":"3841","last_page":"3848"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8455138206481934},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8016653060913086},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6947900652885437},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6731182336807251},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5696160793304443},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4956129789352417},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4461643099784851},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4393160343170166},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.41405779123306274},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4004640281200409},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39998283982276917},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3943061828613281},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31710338592529297},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.15939444303512573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1335335373878479},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10690471529960632},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07293260097503662}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8455138206481934},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8016653060913086},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6947900652885437},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6731182336807251},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5696160793304443},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4956129789352417},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4461643099784851},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4393160343170166},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.41405779123306274},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4004640281200409},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39998283982276917},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3943061828613281},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31710338592529297},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.15939444303512573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1335335373878479},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10690471529960632},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07293260097503662}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3841/33437163/btaa209.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32227202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32227202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholars.fhsu.edu:biology_facpubs-1034","is_oa":true,"landing_page_url":"https://scholars.fhsu.edu/biology_facpubs/35","pdf_url":null,"source":{"id":"https://openalex.org/S4377196602","display_name":"FHSU Scholars Repository (Fort Hays State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I91083438","host_organization_name":"Fort Hays State University","host_organization_lineage":["https://openalex.org/I91083438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biological Sciences Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3841/33437163/btaa209.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G3027536161","display_name":null,"funder_award_id":"418670221","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320308022","display_name":"California Department of Fish and Game","ror":"https://ror.org/02v6w2r95"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3013532204.pdf","grobid_xml":"https://content.openalex.org/works/W3013532204.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1659960894","https://openalex.org/W1846926012","https://openalex.org/W1857123336","https://openalex.org/W1969935418","https://openalex.org/W1995661119","https://openalex.org/W2000730583","https://openalex.org/W2004267169","https://openalex.org/W2013955994","https://openalex.org/W2071465766","https://openalex.org/W2091636366","https://openalex.org/W2093454812","https://openalex.org/W2100412820","https://openalex.org/W2110041134","https://openalex.org/W2114850508","https://openalex.org/W2120141270","https://openalex.org/W2128880918","https://openalex.org/W2142678031","https://openalex.org/W2155065363","https://openalex.org/W2156471420","https://openalex.org/W2169969573","https://openalex.org/W2170488656","https://openalex.org/W2191324623","https://openalex.org/W2260913345","https://openalex.org/W2289678372","https://openalex.org/W2351507149","https://openalex.org/W2401834729","https://openalex.org/W2589179238","https://openalex.org/W2592212939","https://openalex.org/W2747575506","https://openalex.org/W2750139591","https://openalex.org/W2755331695","https://openalex.org/W2760000637","https://openalex.org/W2762393335","https://openalex.org/W2768838077","https://openalex.org/W2864373904","https://openalex.org/W2883471235","https://openalex.org/W2895569822","https://openalex.org/W2897561126","https://openalex.org/W2901011101","https://openalex.org/W2918015010","https://openalex.org/W2921108547","https://openalex.org/W2942315746","https://openalex.org/W2943796178","https://openalex.org/W2972622596","https://openalex.org/W2981543307","https://openalex.org/W2982073921","https://openalex.org/W3000224355","https://openalex.org/W3009228434","https://openalex.org/W3018838798","https://openalex.org/W4236459334","https://openalex.org/W4241156921","https://openalex.org/W4242729757","https://openalex.org/W4244818997","https://openalex.org/W4246555251","https://openalex.org/W4252553099","https://openalex.org/W4252710376","https://openalex.org/W4256333965","https://openalex.org/W4301648249"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2361861616","https://openalex.org/W2382021449","https://openalex.org/W2095118173","https://openalex.org/W2263699433","https://openalex.org/W2341492732","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2377979023"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2020-04-03T00:00:00"}