{"id":"https://openalex.org/W3011341255","doi":"https://doi.org/10.1093/bioinformatics/btaa185","title":"COMER2: GPU-accelerated sensitive and specific homology searches","display_name":"COMER2: GPU-accelerated sensitive and specific homology searches","publication_year":2020,"publication_date":"2020-03-10","ids":{"openalex":"https://openalex.org/W3011341255","doi":"https://doi.org/10.1093/bioinformatics/btaa185","mag":"3011341255","pmid":"https://pubmed.ncbi.nlm.nih.gov/32167522"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3570/33329296/btaa185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3570/33329296/btaa185.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055704497","display_name":"Mindaugas Margelevi\u010dius","orcid":"https://orcid.org/0000-0003-4981-6708"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":true,"raw_author_name":"Mindaugas Margelevi\u010dius","raw_affiliation_strings":["Institute of Biotechnology , Life Sciences Center, Vilnius University, Vilnius 10257, Lithuania"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology , Life Sciences Center, Vilnius University, Vilnius 10257, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5055704497"],"corresponding_institution_ids":["https://openalex.org/I173212132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.585,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.64490101,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"36","issue":"11","first_page":"3570","last_page":"3572"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8129791021347046},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.7078008651733398},{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.6742557883262634},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6225512027740479},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5920770764350891},{"id":"https://openalex.org/keywords/installation","display_name":"Installation","score":0.5776305198669434},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5716862678527832},{"id":"https://openalex.org/keywords/sequence-homology","display_name":"Sequence homology","score":0.44215893745422363},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4368233382701874},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.42326200008392334},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4147800803184509},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.37111973762512207},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.362917423248291},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3239203691482544},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.13310125470161438},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10328236222267151}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8129791021347046},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.7078008651733398},{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.6742557883262634},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6225512027740479},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5920770764350891},{"id":"https://openalex.org/C146778888","wikidata":"https://www.wikidata.org/wiki/Q836862","display_name":"Installation","level":2,"score":0.5776305198669434},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5716862678527832},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.44215893745422363},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4368233382701874},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.42326200008392334},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4147800803184509},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.37111973762512207},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.362917423248291},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3239203691482544},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.13310125470161438},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10328236222267151},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3570/33329296/btaa185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32167522","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32167522","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7267824","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7267824","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa185","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa185","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3570/33329296/btaa185.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1243888906","display_name":null,"funder_award_id":"01.2.2-LMT-K-718","funder_id":"https://openalex.org/F4320322689","funder_display_name":"Lietuvos Mokslo Taryba"},{"id":"https://openalex.org/G1314238101","display_name":null,"funder_award_id":"01.2.2-LMT-K-718-01-0028","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1626036268","display_name":null,"funder_award_id":"01.2.2-LMT-K-718","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G922455614","display_name":null,"funder_award_id":"LMTLT","funder_id":"https://openalex.org/F4320322689","funder_display_name":"Lietuvos Mokslo Taryba"}],"funders":[{"id":"https://openalex.org/F4320322689","display_name":"Lietuvos Mokslo Taryba","ror":"https://ror.org/02gs16m83"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3011341255.pdf","grobid_xml":"https://content.openalex.org/works/W3011341255.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2051210555","https://openalex.org/W2130479394","https://openalex.org/W2138122982","https://openalex.org/W2158714788","https://openalex.org/W2161072217","https://openalex.org/W2336842442","https://openalex.org/W2774178591","https://openalex.org/W2793810666","https://openalex.org/W2800845649","https://openalex.org/W2967400856","https://openalex.org/W2972411752"],"related_works":["https://openalex.org/W2045444909","https://openalex.org/W3153292769","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W4239210160","https://openalex.org/W2941659365","https://openalex.org/W2376300433","https://openalex.org/W4242605858","https://openalex.org/W2132912433","https://openalex.org/W3165395117"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
