{"id":"https://openalex.org/W3007156983","doi":"https://doi.org/10.1093/bioinformatics/btaa145","title":"Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes","display_name":"Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes","publication_year":2020,"publication_date":"2020-02-25","ids":{"openalex":"https://openalex.org/W3007156983","doi":"https://doi.org/10.1093/bioinformatics/btaa145","mag":"3007156983","pmid":"https://pubmed.ncbi.nlm.nih.gov/32108862"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa145","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3552/33329340/btaa145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3552/33329340/btaa145.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061587055","display_name":"Sara Cleemput","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sara Cleemput","raw_affiliation_strings":["Emweb bv , Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bv , Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070023334","display_name":"Wim Dumon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wim Dumon","raw_affiliation_strings":["Emweb bv , Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bv , Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077566266","display_name":"Vagner Fonseca","orcid":"https://orcid.org/0000-0001-5521-6448"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I4210121739","display_name":"Minist\u00e9rio da Sa\u00fade","ror":"https://ror.org/02y7p0749","country_code":"BR","type":"funder","lineage":["https://openalex.org/I4210121739"]},{"id":"https://openalex.org/I4210136275","display_name":"Secretaria da Sa\u00fade","ror":"https://ror.org/03afd8w19","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210136275"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"Vagner Fonseca","raw_affiliation_strings":["Coordena\u00e7\u00e3o Geral dos Laborat\u00f3rios de Sa\u00fade P\u00fablica/Secretaria de Vigil\u00e2ncia em Sa\u00fade , Minist\u00e9rio da Sa\u00fade, (CGLAB/SVS-MS), Bras\u00edlia, Brazil","KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","Laborat\u00f3rio de Gen\u00e9tica Celular e Molecular , Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil"],"affiliations":[{"raw_affiliation_string":"Coordena\u00e7\u00e3o Geral dos Laborat\u00f3rios de Sa\u00fade P\u00fablica/Secretaria de Vigil\u00e2ncia em Sa\u00fade , Minist\u00e9rio da Sa\u00fade, (CGLAB/SVS-MS), Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I4210136275","https://openalex.org/I4210121739"]},{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]},{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Celular e Molecular , Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012531347","display_name":"Wasim Abdool Karim","orcid":null},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Wasim Abdool Karim","raw_affiliation_strings":["KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074938320","display_name":"Marta Giovanetti","orcid":"https://orcid.org/0000-0002-5849-7326"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marta Giovanetti","raw_affiliation_strings":["Laborat\u00f3rio de Flaviv\u00edrus , Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, RJ, Brazil"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Flaviv\u00edrus , Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, RJ, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071835363","display_name":"Lu\u00edz Carlos J\u00fanior Alc\u00e2ntara","orcid":"https://orcid.org/0000-0002-6769-9931"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz Carlos Alcantara","raw_affiliation_strings":["Laborat\u00f3rio de Flaviv\u00edrus , Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, RJ, Brazil","Laborat\u00f3rio de Gen\u00e9tica Celular e Molecular , Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Flaviv\u00edrus , Instituto Oswaldo Cruz, Funda\u00e7\u00e3o Oswaldo Cruz, Rio de Janeiro, RJ, Brazil","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Celular e Molecular , Instituto de Ci\u00eancias Biol\u00f3gicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081337249","display_name":"Koen Deforche","orcid":"https://orcid.org/0000-0003-3898-9494"},"institutions":[{"id":"https://openalex.org/I4210130072","display_name":"Emweb (Belgium)","ror":"https://ror.org/03800bc44","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210130072"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Koen Deforche","raw_affiliation_strings":["Emweb bv , Herent, Belgium"],"affiliations":[{"raw_affiliation_string":"Emweb bv , Herent, Belgium","institution_ids":["https://openalex.org/I4210130072"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051373841","display_name":"T\u00falio de Oliveira","orcid":"https://orcid.org/0000-0002-3027-5254"},"institutions":[{"id":"https://openalex.org/I2800715850","display_name":"Centre for the AIDS Programme of Research in South Africa","ror":"https://ror.org/04qkg4668","country_code":"ZA","type":"other","lineage":["https://openalex.org/I2800715850"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["US","ZA"],"is_corresponding":true,"raw_author_name":"Tulio de Oliveira","raw_affiliation_strings":["Centre for the AIDS Programme of Research in South Africa (CAPRISA) , Durban, South Africa","Department of Global Health , University of Washington, Seattle, WA, USA","KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"Centre for the AIDS Programme of Research in South Africa (CAPRISA) , Durban, South Africa","institution_ids":["https://openalex.org/I2800715850"]},{"raw_affiliation_string":"Department of Global Health , University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP) , School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5051373841","https://openalex.org/A5081337249"],"corresponding_institution_ids":["https://openalex.org/I201448701","https://openalex.org/I2800715850","https://openalex.org/I4210130072","https://openalex.org/I95023434"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0485,"has_fulltext":true,"cited_by_count":176,"citation_normalized_percentile":{"value":0.9609072,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"36","issue":"11","first_page":"3552","last_page":"3555"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9718000292778015,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.812411367893219},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.7211191654205322},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.5982363224029541},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5791535973548889},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5360197424888611},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5335358381271362},{"id":"https://openalex.org/keywords/outbreak","display_name":"Outbreak","score":0.5285298228263855},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.47371596097946167},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4523991346359253},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4402036964893341},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4296366572380066},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.38953113555908203},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.32872724533081055},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28340551257133484},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.10245606303215027},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1022382378578186},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.0809457004070282}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.812411367893219},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.7211191654205322},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.5982363224029541},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5791535973548889},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5360197424888611},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5335358381271362},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.5285298228263855},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.47371596097946167},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4523991346359253},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4402036964893341},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4296366572380066},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.38953113555908203},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.32872724533081055},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28340551257133484},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.10245606303215027},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1022382378578186},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0809457004070282},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073640","descriptor_name":"Betacoronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000073640","descriptor_name":"Betacoronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000073640","descriptor_name":"Betacoronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011024","descriptor_name":"Pneumonia, Viral","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D011024","descriptor_name":"Pneumonia, Viral","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D011024","descriptor_name":"Pneumonia, Viral","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017934","descriptor_name":"Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017934","descriptor_name":"Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017934","descriptor_name":"Coronavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018352","descriptor_name":"Coronavirus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D018352","descriptor_name":"Coronavirus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D018352","descriptor_name":"Coronavirus Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa145","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3552/33329340/btaa145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32108862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32108862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.arca.fiocruz.br:icict/40347","is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/40347","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arca.fiocruz.br:icict/40347","is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/40347","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:FIOCRUZ","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:6069786","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7112083","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa145","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa145","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3552/33329340/btaa145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4339321957","display_name":null,"funder_award_id":"UKZN HIVEPI","funder_id":"https://openalex.org/F4320320672","funder_display_name":"South African Medical Research Council"},{"id":"https://openalex.org/G8240277162","display_name":null,"funder_award_id":"MRC-RFA-UFSP-01-2013","funder_id":"https://openalex.org/F4320320672","funder_display_name":"South African Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320308203","display_name":"California Department of Public Health","ror":"https://ror.org/011cc8156"},{"id":"https://openalex.org/F4320309677","display_name":"Arizona Department of Health Services","ror":"https://ror.org/01smpj292"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320672","display_name":"South African Medical Research Council","ror":"https://ror.org/05q60vz69"},{"id":"https://openalex.org/F4320321099","display_name":"Bundesamt f\u00fcr Gesundheit","ror":"https://ror.org/01qtc5416"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320322170","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86"},{"id":"https://openalex.org/F4320322662","display_name":"Chinese Center for Disease Control and Prevention","ror":"https://ror.org/04wktzw65"},{"id":"https://openalex.org/F4320322812","display_name":"Inyuvesi Yakwazulu-Natali","ror":"https://ror.org/04qzfn040"},{"id":"https://openalex.org/F4320323137","display_name":"Chinese Academy of Medical Sciences","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320324116","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17"},{"id":"https://openalex.org/F4320326853","display_name":"Peking Union Medical College","ror":null},{"id":"https://openalex.org/F4320326940","display_name":"State Key Laboratory of Virology","ror":null},{"id":"https://openalex.org/F4320332162","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3007156983.pdf","grobid_xml":"https://content.openalex.org/works/W3007156983.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2068448872","https://openalex.org/W2087064593","https://openalex.org/W2103546861","https://openalex.org/W2132926880","https://openalex.org/W2146058063","https://openalex.org/W2160378127","https://openalex.org/W2801900613","https://openalex.org/W2887749901","https://openalex.org/W2944239259","https://openalex.org/W3001118548","https://openalex.org/W3001897055","https://openalex.org/W3004318991","https://openalex.org/W3013266235","https://openalex.org/W3030593001","https://openalex.org/W3033249405","https://openalex.org/W3102928713"],"related_works":["https://openalex.org/W2373635223","https://openalex.org/W2412355096","https://openalex.org/W1990012352","https://openalex.org/W2431766951","https://openalex.org/W4385969441","https://openalex.org/W127458931","https://openalex.org/W2362266265","https://openalex.org/W3028429280","https://openalex.org/W2557977292","https://openalex.org/W120499389"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":27},{"year":2021,"cited_by_count":54},{"year":2020,"cited_by_count":56}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
