{"id":"https://openalex.org/W3007236030","doi":"https://doi.org/10.1093/bioinformatics/btaa142","title":"rMSIproc: an R package for mass spectrometry imaging data processing","display_name":"rMSIproc: an R package for mass spectrometry imaging data processing","publication_year":2020,"publication_date":"2020-02-25","ids":{"openalex":"https://openalex.org/W3007236030","doi":"https://doi.org/10.1093/bioinformatics/btaa142","mag":"3007236030","pmid":"https://pubmed.ncbi.nlm.nih.gov/32108859"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa142","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa142","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3618/33329129/btaa142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3618/33329129/btaa142.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062192621","display_name":"Pere R\u00e0fols","orcid":"https://orcid.org/0000-0002-9240-4058"},"institutions":[{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pere R\u00e0fols","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027181844","display_name":"Bram Heijs","orcid":"https://orcid.org/0000-0001-6328-9305"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bram Heijs","raw_affiliation_strings":["Center for Proteomics & Metabolomics , Leiden University Medical Center, Leiden, The Netherlands","Department of Pathology , Leiden University Medical Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Proteomics & Metabolomics , Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I4210101928"]},{"raw_affiliation_string":"Department of Pathology , Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066505668","display_name":"Esteban del Castillo","orcid":"https://orcid.org/0000-0002-1743-656X"},"institutions":[{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Esteban del Castillo","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033757285","display_name":"\u00d3scar Yanes","orcid":"https://orcid.org/0000-0003-3695-7157"},"institutions":[{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Yanes","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087234831","display_name":"Liam A. McDonnell","orcid":"https://orcid.org/0000-0003-0595-9491"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2801616091","display_name":"Fondazione Pisa","ror":"https://ror.org/05jhnab13","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I2801616091"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]},{"id":"https://openalex.org/I73063919","display_name":"International Flame Research Foundation","ror":"https://ror.org/04pyb7y63","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I73063919"]}],"countries":["IT","NL"],"is_corresponding":false,"raw_author_name":"Liam A McDonnell","raw_affiliation_strings":["Center for Proteomics & Metabolomics , Leiden University Medical Center, Leiden, The Netherlands","Department of Pathology , Leiden University Medical Center, Leiden, The Netherlands","Fondazione Pisana per la Scienza ONLUS , Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Proteomics & Metabolomics , Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345","https://openalex.org/I4210101928"]},{"raw_affiliation_string":"Department of Pathology , Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"Fondazione Pisana per la Scienza ONLUS , Pisa, Italy","institution_ids":["https://openalex.org/I2801616091","https://openalex.org/I73063919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057425358","display_name":"J. Brezmes","orcid":"https://orcid.org/0000-0002-7704-8550"},"institutions":[{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Brezmes","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062652062","display_name":"Iara P\u00e9rez\u2010Taboada","orcid":"https://orcid.org/0000-0002-2697-5178"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210091816","display_name":"Instituto de Investigaciones Biom\u00e9dicas Sols-Morreale","ror":"https://ror.org/00ha1f767","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210091816","https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Iara P\u00e9rez-Taboada","raw_affiliation_strings":["Instituto de Investigaciones Biom\u00e9dicas Alberto Sols , Consejo Superior de Investigaciones Cient\u00edficas (CSIC)/Universidad Aut\u00f3noma de Madrid, Madrid, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Investigaciones Biom\u00e9dicas Alberto Sols , Consejo Superior de Investigaciones Cient\u00edficas (CSIC)/Universidad Aut\u00f3noma de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210091816","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054477284","display_name":"Mario Vallejo","orcid":"https://orcid.org/0000-0002-6422-0323"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210091816","display_name":"Instituto de Investigaciones Biom\u00e9dicas Sols-Morreale","ror":"https://ror.org/00ha1f767","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210091816","https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mario Vallejo","raw_affiliation_strings":["Instituto de Investigaciones Biom\u00e9dicas Alberto Sols , Consejo Superior de Investigaciones Cient\u00edficas (CSIC)/Universidad Aut\u00f3noma de Madrid, Madrid, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Investigaciones Biom\u00e9dicas Alberto Sols , Consejo Superior de Investigaciones Cient\u00edficas (CSIC)/Universidad Aut\u00f3noma de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210091816","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048397358","display_name":"Mar\u00eda Garc\u00eda\u2010Altares","orcid":"https://orcid.org/0000-0003-4255-1487"},"institutions":[{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Garc\u00eda-Altares","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084239219","display_name":"Xavier Correig","orcid":"https://orcid.org/0000-0002-6902-3054"},"institutions":[{"id":"https://openalex.org/I4210092133","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red Diabetes y Enfermedades Metab\u00f3licas Asociadas","ror":"https://ror.org/00dwgct76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210092133","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210101772","display_name":"Institut de Recerca Biom\u00e8dica Catalunya Sud","ror":"https://ror.org/01av3a615","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210101772","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I55952717","display_name":"Universitat Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Correig","raw_affiliation_strings":["Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering , Rovira i Virgili University, IISPV, Tarragona, Spain","institution_ids":["https://openalex.org/I4210101772","https://openalex.org/I55952717"]},{"raw_affiliation_string":"Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders (CIBERDEM) , Madrid, Spain","institution_ids":["https://openalex.org/I4210092133"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5062192621"],"corresponding_institution_ids":["https://openalex.org/I4210092133","https://openalex.org/I4210101772","https://openalex.org/I55952717"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0175,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.86511729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"36","issue":"11","first_page":"3618","last_page":"3619"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.54339998960495,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.54339998960495,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.24940000474452972,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.06880000233650208,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8245048522949219},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8141919374465942},{"id":"https://openalex.org/keywords/mass-spectrometry-imaging","display_name":"Mass spectrometry imaging","score":0.5583977699279785},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.49984002113342285},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4859865605831146},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4676031172275543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43618762493133545},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4348798394203186},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4193207323551178},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.2888646125793457},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.26127880811691284},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22482773661613464},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13221895694732666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8245048522949219},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8141919374465942},{"id":"https://openalex.org/C24066741","wikidata":"https://www.wikidata.org/wiki/Q3796564","display_name":"Mass spectrometry imaging","level":3,"score":0.5583977699279785},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.49984002113342285},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4859865605831146},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4676031172275543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43618762493133545},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4348798394203186},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4193207323551178},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.2888646125793457},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.26127880811691284},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22482773661613464},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13221895694732666},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaa142","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa142","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3618/33329129/btaa142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32108859","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32108859","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:lumc:oai:scholarlypublications.universiteitleiden.nl:item_3182291","is_oa":true,"landing_page_url":"http://hdl.handle.net/1887/3182291","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 36(11), 3618 - 3619. OXFORD UNIV PRESS","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:digital.csic.es:10261/222334","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/222334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3182291","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/article/36/11/3618/5766117","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa142","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa142","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3618/33329129/btaa142.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5}],"awards":[{"id":"https://openalex.org/G1077496425","display_name":null,"funder_award_id":"TEC2015\u201069076\u2010P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G1275801773","display_name":null,"funder_award_id":"BES-2013","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G1643719742","display_name":null,"funder_award_id":"BFU2017-89336-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2874472222","display_name":null,"funder_award_id":"FPU 14/04457","funder_id":"https://openalex.org/F4320321764","funder_display_name":"Ministerio de Educaci\u00f3n, Cultura y Deporte"},{"id":"https://openalex.org/G3288897321","display_name":null,"funder_award_id":"2017-SGR","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321764","display_name":"Ministerio de Educaci\u00f3n, Cultura y Deporte","ror":"https://ror.org/03nc27g21"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3007236030.pdf","grobid_xml":"https://content.openalex.org/works/W3007236030.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2033278243","https://openalex.org/W2057652593","https://openalex.org/W2507828173","https://openalex.org/W2561045520","https://openalex.org/W2597856736","https://openalex.org/W2625100593","https://openalex.org/W2755255025","https://openalex.org/W2795838644"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W4220668561"],"abstract_inverted_index":{"SUMMARY:":[0],"Mass":[1],"spectrometry":[2],"imaging":[3],"(MSI)":[4],"can":[5],"reveal":[6],"biochemical":[7,31],"information":[8],"directly":[9],"from":[10,87],"a":[11,16,43,61,80,111,116],"tissue":[12],"section.":[13],"MSI":[14,49,133],"generates":[15],"large":[17],"quantity":[18],"of":[19,124],"complex":[20],"spectral":[21,65],"data":[22,45,149],"which":[23,69],"is":[24,93,115,139],"still":[25],"challenging":[26],"to":[27,71,78,95,120,128],"translate":[28],"into":[29],"relevant":[30],"information.":[32],"Here,":[33],"we":[34],"present":[35],"rMSIproc,":[36],"an":[37],"open-source":[38],"R":[39],"package":[40,59],"that":[41],"implements":[42],"full":[44,122],"processing":[46],"workflow":[47],"for":[48,64],"experiments":[50],"performed":[51],"using":[52,110],"TOF":[53],"or":[54,89],"FT-based":[55],"mass":[56],"spectrometers.":[57],"The":[58],"provides":[60],"novel":[62],"strategy":[63],"alignment":[66],"and":[67,105],"recalibration,":[68],"allows":[70],"process":[72],"multiple":[73,85],"datasets":[74,86],"simultaneously.":[75],"This":[76],"enables":[77],"perform":[79],"confident":[81],"statistical":[82],"analysis":[83],"with":[84,97],"one":[88],"several":[90],"experiments.":[91],"rMSIproc":[92,114,138],"designed":[94],"work":[96],"files":[98],"larger":[99],"than":[100],"the":[101,106,131],"computer":[102,126],"memory":[103],"capacity":[104],"algorithms":[107],"are":[108,150],"implemented":[109],"multi-threading":[112],"strategy.":[113],"powerful":[117],"tool":[118],"able":[119],"take":[121],"advantage":[123],"modern":[125],"systems":[127],"completely":[129],"develop":[130],"whole":[132],"potential.":[134],"AVAILABILITY":[135],"AND":[136],"IMPLEMENTATION:":[137],"freely":[140],"available":[141,151],"at":[142,152],"https://github.com/prafols/rMSIproc.":[143],"CONTACT:":[144],"pere.rafols@urv.cat.":[145],"SUPPLEMENTARY":[146],"INFORMATION:":[147],"Supplementary":[148],"Bioinformatics":[153],"online.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
