{"id":"https://openalex.org/W3010256878","doi":"https://doi.org/10.1093/bioinformatics/btaa138","title":"Breeze: an integrated quality control and data analysis application for high-throughput drug screening","display_name":"Breeze: an integrated quality control and data analysis application for high-throughput drug screening","publication_year":2020,"publication_date":"2020-02-26","ids":{"openalex":"https://openalex.org/W3010256878","doi":"https://doi.org/10.1093/bioinformatics/btaa138","mag":"3010256878","pmid":"https://pubmed.ncbi.nlm.nih.gov/32119072"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa138","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa138","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3602/33329324/btaa138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3602/33329324/btaa138.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053034632","display_name":"Swapnil Potdar","orcid":"https://orcid.org/0000-0002-2778-6918"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Swapnil Potdar","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":"https://orcid.org/0000-0002-2778-6918","affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070170202","display_name":"Aleksandr Ianevski","orcid":"https://orcid.org/0000-0002-7780-482X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Aleksandr Ianevski","raw_affiliation_strings":["Department of Computer Science , Helsinki Institute for Information Technology (HIIT), Aalto University, FI-02150 Espoo, Finland","Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Helsinki Institute for Information Technology (HIIT), Aalto University, FI-02150 Espoo, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038194713","display_name":"John-Patrick Mpindi","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"John-Patrick Mpindi","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058211125","display_name":"Dmitrii Bychkov","orcid":"https://orcid.org/0000-0003-1579-1127"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Dmitrii Bychkov","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015614546","display_name":"Cl\u00e9ment Fiere","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Fiere","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015671489","display_name":"Philipp Ianevski","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Philipp Ianevski","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079229880","display_name":"Bhagwan Yadav","orcid":"https://orcid.org/0000-0002-3502-9335"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Bhagwan Yadav","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067760174","display_name":"Krister Wennerberg","orcid":"https://orcid.org/0000-0002-1352-4220"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["DK","FI"],"is_corresponding":false,"raw_author_name":"Krister Wennerberg","raw_affiliation_strings":["Biotech Research & Innovation Centre , University of Copenhagen, 2200 Copenhagen N, Denmark","Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotech Research & Innovation Centre , University of Copenhagen, 2200 Copenhagen N, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["Department of Computer Science , Helsinki Institute for Information Technology (HIIT), Aalto University, FI-02150 Espoo, Finland","Department of Mathematics and Statistics , University of Turku, FI-20014 Turku, Finland","Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":"https://orcid.org/0000-0002-0886-9769","affiliations":[{"raw_affiliation_string":"Department of Computer Science , Helsinki Institute for Information Technology (HIIT), Aalto University, FI-02150 Espoo, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"raw_affiliation_string":"Department of Mathematics and Statistics , University of Turku, FI-20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050670008","display_name":"Olli Kallioniemi","orcid":"https://orcid.org/0000-0002-3231-0332"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI","SE"],"is_corresponding":false,"raw_author_name":"Olli Kallioniemi","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","Science for Life Laboratory (SciLifeLab) , Department of Oncology and Pathology, Karolinska Institutet, 171 65 Solna, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"raw_affiliation_string":"Science for Life Laboratory (SciLifeLab) , Department of Oncology and Pathology, Karolinska Institutet, 171 65 Solna, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062171296","display_name":"Jani Saarela","orcid":"https://orcid.org/0000-0001-7306-7175"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jani Saarela","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078078476","display_name":"P\u00e4ivi \u00d6stling","orcid":"https://orcid.org/0000-0001-5501-466X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I4210133586","display_name":"Institute for Molecular Medicine Finland","ror":"https://ror.org/030sbze61","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]}],"countries":["FI","SE"],"is_corresponding":false,"raw_author_name":"P\u00e4ivi \u00d6stling","raw_affiliation_strings":["Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","Science for Life Laboratory (SciLifeLab) , Department of Oncology and Pathology, Karolinska Institutet, 171 65 Solna, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Medicine Finland (FIMM) , University of Helsinki, FI-00290 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"]},{"raw_affiliation_string":"Science for Life Laboratory (SciLifeLab) , Department of Oncology and Pathology, Karolinska Institutet, 171 65 Solna, Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5053034632"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210133586"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.4829,"has_fulltext":true,"cited_by_count":113,"citation_normalized_percentile":{"value":0.98106982,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"11","first_page":"3602","last_page":"3604"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6499999761581421,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.6499999761581421,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.14920000731945038,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.03180000185966492,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6940675973892212},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6564791202545166},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5768932700157166},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5110200643539429},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.4974382221698761},{"id":"https://openalex.org/keywords/high-throughput-screening","display_name":"High-throughput screening","score":0.44129323959350586},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4064503312110901},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.22237905859947205},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1858820915222168},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1719057261943817},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12117365002632141},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11654850840568542},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.112591952085495}],"concepts":[{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6940675973892212},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6564791202545166},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5768932700157166},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5110200643539429},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.4974382221698761},{"id":"https://openalex.org/C51323132","wikidata":"https://www.wikidata.org/wiki/Q626251","display_name":"High-throughput screening","level":2,"score":0.44129323959350586},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4064503312110901},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.22237905859947205},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1858820915222168},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1719057261943817},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12117365002632141},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11654850840568542},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.112591952085495},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btaa138","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa138","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3602/33329324/btaa138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32119072","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32119072","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:helda.helsinki.fi:10138/318495","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/318495","pdf_url":"http://hdl.handle.net/10138/318495","source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pure.atira.dk:publications/50a7a303-9201-4f43-bd78-3436de0c14cd","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/50a7a303-9201-4f43-bd78-3436de0c14cd","pdf_url":"https://curis.ku.dk/ws/files/245670662/btaa138.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Potdar , S , Ianevski , A , Mpindi , J , Bychkov , D , Fiere , C , Ianevski , P , Yadav , B , Wennerberg , K , Aittokallio , T , Kallioniemi , O , Saarela , J & \u00d6stling , P 2020 , ' Breeze: an integrated quality control and data analysis application for high-throughput drug screening ' , Bioinformatics , vol. 36 , no. 11 , pp. 3602-3604 . https://doi.org/10.1093/bioinformatics/btaa138","raw_type":"article"},{"id":"pmh:oai:www.utupub.fi:10024/163841","is_oa":true,"landing_page_url":"https://www.utupub.fi/handle/10024/163841","pdf_url":"https://www.utupub.fi/bitstream/10024/163841/1/btaa138.pdf","source":{"id":"https://openalex.org/S4306402470","display_name":"UTUPub (University of Turku)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I155660961","host_organization_name":"University of Turku","host_organization_lineage":["https://openalex.org/I155660961"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7267830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7267830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/113795","is_oa":true,"landing_page_url":"https://aaltodoc.aalto.fi/handle/123456789/113795","pdf_url":null,"source":{"id":"https://openalex.org/S4306401662","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa138","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa138","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3602/33329324/btaa138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310086","display_name":"Helsingin Yliopisto","ror":"https://ror.org/040af2s02"},{"id":"https://openalex.org/F4320322400","display_name":"Magnus Ehrnroothin S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/02cdzet69"},{"id":"https://openalex.org/F4320323824","display_name":"Sy\u00f6p\u00e4j\u00e4rjest\u00f6t","ror":"https://ror.org/05pgg4z49"},{"id":"https://openalex.org/F4320328139","display_name":"Biocenter Finland","ror":"https://ror.org/03aay6c48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3010256878.pdf","grobid_xml":"https://content.openalex.org/works/W3010256878.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1836834096","https://openalex.org/W1991001144","https://openalex.org/W2002783575","https://openalex.org/W2029437336","https://openalex.org/W2034351069","https://openalex.org/W2034476680","https://openalex.org/W2043398720","https://openalex.org/W2087579091","https://openalex.org/W2103742120","https://openalex.org/W2108068107","https://openalex.org/W2115517051","https://openalex.org/W2149070417","https://openalex.org/W2175970000","https://openalex.org/W2261944919","https://openalex.org/W2346294150","https://openalex.org/W2407075689","https://openalex.org/W2555886253","https://openalex.org/W2557547609","https://openalex.org/W2774172538","https://openalex.org/W2795679584","https://openalex.org/W6675933251"],"related_works":["https://openalex.org/W2136583354","https://openalex.org/W2111238207","https://openalex.org/W2760721665","https://openalex.org/W580487332","https://openalex.org/W2097654801","https://openalex.org/W1519879345","https://openalex.org/W3150498631","https://openalex.org/W2371195977","https://openalex.org/W2768489290","https://openalex.org/W2354872674"],"abstract_inverted_index":{"SUMMARY:":[0],"High-throughput":[1],"screening":[2],"(HTS)":[3],"enables":[4,75],"systematic":[5],"testing":[6],"of":[7,9,35,44,114,122],"thousands":[8],"chemical":[10],"compounds":[11],"for":[12,70,93,105],"potential":[13],"use":[14,43],"as":[15],"investigational":[16],"and":[17,32,51,66,84,112,134],"therapeutic":[18],"agents.":[19],"HTS":[20,38,71],"experiments":[21],"are":[22,162],"often":[23],"conducted":[24],"in":[25,87],"multi-well":[26],"plates":[27],"that":[28],"inherently":[29],"bear":[30],"technical":[31,135],"experimental":[33],"sources":[34],"error.":[36],"Thus,":[37],"data":[39,67,106,161],"processing":[40],"requires":[41],"the":[42,115,123,141],"robust":[45],"quality":[46,64,107],"control":[47,65],"procedures":[48],"before":[49],"analysis":[50,59,68],"interpretation.":[52],"Here,":[53],"we":[54],"have":[55],"implemented":[56],"an":[57,62],"open-source":[58],"application,":[60],"Breeze,":[61],"integrated":[63],"application":[69,100,130],"data.":[72],"Furthermore,":[73],"Breeze":[74,99,129],"a":[76,102],"reliable":[77],"way":[78],"to":[79],"identify":[80],"individual":[81],"drug":[82,116],"sensitivity":[83],"resistance":[85],"patterns":[86],"cell":[88],"lines":[89],"or":[90],"patient-derived":[91],"samples":[92],"functional":[94],"precision":[95],"medicine":[96],"applications.":[97],"The":[98,128],"provides":[101],"complete":[103],"solution":[104],"assessment,":[108],"dose-response":[109],"curve":[110],"fitting":[111],"quantification":[113],"responses":[117],"along":[118],"with":[119,131],"interactive":[120],"visualization":[121],"results.":[124],"AVAILABILITY":[125],"AND":[126],"IMPLEMENTATION:":[127],"video":[132],"tutorial":[133],"documentation":[136],"is":[137,145],"accessible":[138],"at":[139,148,164],"https://breeze.fimm.fi;":[140],"R":[142],"source":[143],"code":[144],"publicly":[146],"available":[147,163],"https://github.com/potdarswapnil/Breeze":[149],"under":[150],"GNU":[151],"General":[152],"Public":[153],"License":[154],"v3.0.":[155],"CONTACT:":[156],"swapnil.potdar@helsinki.fi.":[157],"SUPPLEMENTARY":[158],"INFORMATION:":[159],"Supplementary":[160],"Bioinformatics":[165],"online.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":8}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
